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多边缘 X 射线吸收光谱法研究巯基顺序氧化对腈水合酶模拟物的影响。

Influence of sequential thiolate oxidation on a nitrile hydratase mimic probed by multiedge X-ray absorption spectroscopy.

机构信息

Department of Chemistry, University of Nevada, Reno, Nevada 89557, USA.

出版信息

Inorg Chem. 2012 Jun 4;51(11):6032-45. doi: 10.1021/ic202453c. Epub 2012 May 16.

DOI:10.1021/ic202453c
PMID:22591049
Abstract

Nitrile hydratases (NHases) are Fe(III)- and Co(III)-containing hydrolytic enzymes that convert nitriles into amides. The metal-center is contained within an N(2)S(3) coordination motif with two post-translationally modified cysteinates contained in a cis arrangement, which have been converted into a sulfinate (R-SO(2)(-)) and a sulfenate (R-SO(-)) group. Herein, we utilize Ru L-edge and ligand (N-, S-, and P-) K-edge X-ray absorption spectroscopies to probe the influence that these modifications have on the electronic structure of a series of sequentially oxidized thiolate-coordinated Ru(II) complexes ((bmmp-TASN)RuPPh(3), (bmmp-O(2)-TASN)RuPPh(3), and (bmmp-O(3)-TASN)RuPPh(3)). Included is the use of N K-edge spectroscopy, which was used for the first time to extract N-metal covalency parameters. We find that upon oxygenation of the bis-thiolate compound (bmmp-TASN)RuPPh(3) to the sulfenato species (bmmp-O(2)-TASN)RuPPh(3) and then to the mixed sulfenato/sulfinato speices (bmmp-O(3)-TASN)RuPPh(3) the complexes become progressively more ionic, and hence the Ru(II) center becomes a harder Lewis acid. These findings are reinforced by hybrid DFT calculations (B(38HF)P86) using a large quadruple-ζ basis set. The biological implications of these findings in relation to the NHase catalytic cycle are discussed in terms of the creation of a harder Lewis acid, which aids in nitrile hydrolysis.

摘要

腈水合酶(NHases)是含有 Fe(III) 和 Co(III) 的水解酶,可将腈转化为酰胺。金属中心位于 N(2)S(3)配位基序内,其中两个经翻译后修饰的半胱氨酸残基以顺式排列,已转化为亚磺酸盐(R-SO(2)(-))和亚硫酸酯(R-SO(-))基团。在此,我们利用 Ru L 边缘和配体(N-、S- 和 P-)K 边缘 X 射线吸收光谱来探究这些修饰对一系列依次氧化的硫醇配位 Ru(II)配合物((bmmp-TASN)RuPPh(3)、(bmmp-O(2)-TASN)RuPPh(3) 和 (bmmp-O(3)-TASN)RuPPh(3))电子结构的影响。其中包括使用 N K 边缘光谱学,这是首次用于提取 N-金属共价参数。我们发现,当双硫醇化合物 (bmmp-TASN)RuPPh(3)被氧化为亚硫酸酯物种 (bmmp-O(2)-TASN)RuPPh(3),然后再氧化为混合亚硫酸酯/亚磺酸盐物种 (bmmp-O(3)-TASN)RuPPh(3)时,配合物变得越来越离子化,因此 Ru(II)中心成为更强的路易斯酸。这些发现得到了使用大四重-ζ基组的混合 DFT 计算(B(38HF)P86)的支持。这些发现对 NHase 催化循环的生物学意义在于创造了一个更强的路易斯酸,这有助于腈水解。

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