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[单性蜥蜴亚美尼亚岩蜥(蜥蜴科)中高度可变微卫星位点Du161(臂)的等位基因多态性的分子本质]

[Molecular nature of allelic polymorphism of highly variable microsatellite locus Du161(arm) in unisexual lizard Darevskia armeniaca (Lacertidae)].

作者信息

Malysheva D N, Korchagin V I, Tokarskaia O N, Ryskov A P

出版信息

Genetika. 2012 Mar;48(3):315-23.

Abstract

In the genome of unisexual (parthenogenetic) lizard Darevskia armeniaca, highly variable locus Du 161 (arm) was discovered. Analysis of allelic polymorphism was carried out using locus-specific PCR of the lizard DNA specimens from 13 isolated Armenian populations (N = 138). In the sample examined, a total of 12 Du 161(arm) alleles were identified, and their differences at the level of primary DNA structure were determined. Sequence analysis of the Du 161 (arm) alleles showed that their microsatellite clusters contained repeats of one type (GATA repeats). Allelic Du 161 (arm) variants differed in the number of GATA monomers in microsatellite, point mutations of transition and transversion types, located at fixed distances from microsatellite cluster, and by single nucleotide insertions, as well as by longer insertions located within and outside of the microsatellite cluster. Moreover, point mutations formed different combinations (haplotypes), typical of certain alleles. These combinations can be used for the analysis of the origin and inheritance of these alleles in D. armeniaca, as well as for investigation of their interspecific variation in the representatives of the genus Darevskia.

摘要

在单性生殖(孤雌生殖)的蜥蜴亚美尼亚岩蜥(Darevskia armeniaca)基因组中,发现了高度可变的位点Du 161(arm)。利用位点特异性PCR对来自13个孤立的亚美尼亚种群(N = 138)的蜥蜴DNA样本进行了等位基因多态性分析。在所检测的样本中,共鉴定出12个Du 161(arm)等位基因,并确定了它们在初级DNA结构水平上的差异。Du 161(arm)等位基因的序列分析表明,它们的微卫星簇包含一种类型的重复序列(GATA重复序列)。等位基因Du 161(arm)变体在微卫星中GATA单体的数量、位于距微卫星簇固定距离处的转换和颠换类型的点突变、单核苷酸插入以及微卫星簇内外的较长插入方面存在差异。此外,点突变形成了不同的组合(单倍型),这些组合是某些等位基因所特有的。这些组合可用于分析亚美尼亚岩蜥中这些等位基因的起源和遗传,以及研究它们在岩蜥属代表中的种间变异。

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