Suppr超能文献

与batimastat复合的人ADAM-8催化结构域的结构

Structure of human ADAM-8 catalytic domain complexed with batimastat.

作者信息

Hall Troii, Shieh Huey Sheng, Day Jacqueline E, Caspers Nicole, Chrencik Jill E, Williams Jennifer M, Pegg Lyle E, Pauley Adele M, Moon Andrea F, Krahn Joseph M, Fischer David H, Kiefer James R, Tomasselli Alfredo G, Zack Marc D

机构信息

Pfizer Inc, 700 Chesterfield Parkway West, Chesterfield, MO 63017, USA.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jun 1;68(Pt 6):616-21. doi: 10.1107/S1744309112015618. Epub 2012 May 22.

Abstract

The role of ADAM-8 in cancer and inflammatory diseases such as allergy, arthritis and asthma makes it an attractive target for drug development. Therefore, the catalytic domain of human ADAM-8 was expressed, purified and crystallized in complex with a hydroxamic acid inhibitor, batimastat. The crystal structure of the enzyme-inhibitor complex was refined to 2.1 Å resolution. ADAM-8 has an overall fold similar to those of other ADAM members, including a central five-stranded β-sheet and a catalytic Zn(2+) ion. However, unique differences within the S1' binding loop of ADAM-8 are observed which might be exploited to confer specificity and selectivity to ADAM-8 competitive inhibitors for the treatment of diseases involving this enzyme.

摘要

ADAM-8在癌症以及诸如过敏、关节炎和哮喘等炎症性疾病中所起的作用,使其成为药物研发的一个有吸引力的靶点。因此,人ADAM-8的催化结构域得以表达、纯化,并与一种异羟肟酸抑制剂batimastat形成复合物后进行结晶。该酶-抑制剂复合物的晶体结构被精修至2.1 Å的分辨率。ADAM-8的整体折叠结构与其他ADAM家族成员相似,包括一个中心的五链β-折叠片层和一个催化性Zn(2+)离子。然而,在ADAM-8的S1'结合环内观察到了独特的差异,这些差异可能被用于赋予ADAM-8竞争性抑制剂特异性和选择性,以治疗涉及该酶的疾病。

相似文献

1
Structure of human ADAM-8 catalytic domain complexed with batimastat.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jun 1;68(Pt 6):616-21. doi: 10.1107/S1744309112015618. Epub 2012 May 22.
5
Batimastat, a potent matrix mealloproteinase inhibitor, exhibits an unexpected mode of binding.
Proc Natl Acad Sci U S A. 1996 Apr 2;93(7):2749-54. doi: 10.1073/pnas.93.7.2749.
7
Fluorescent Analogue of Batimastat Enables Imaging of α-Secretase in Living Cells.
ACS Chem Neurosci. 2016 Jan 20;7(1):40-5. doi: 10.1021/acschemneuro.5b00283. Epub 2015 Nov 18.
8
Modeling of enzyme-substrate complexes for the metalloproteases MMP-3, ADAM-9 and ADAM-10.
J Comput Aided Mol Des. 2003 Sep;17(9):551-65. doi: 10.1023/b:jcam.0000005765.13637.38.
10
The design, synthesis, and structure-activity relationships of a series of macrocyclic MMP inhibitors.
Bioorg Med Chem Lett. 1998 Aug 18;8(16):2087-92. doi: 10.1016/s0960-894x(98)00396-5.

引用本文的文献

2
A Novel Class of Human ADAM8 Inhibitory Antibodies for Treatment of Triple-Negative Breast Cancer.
Pharmaceutics. 2024 Apr 13;16(4):536. doi: 10.3390/pharmaceutics16040536.
3
Developments in Carbohydrate-Based Metzincin Inhibitors.
Pharmaceuticals (Basel). 2020 Nov 10;13(11):376. doi: 10.3390/ph13110376.
4
ADAM and ADAMTS Family Proteins and Snake Venom Metalloproteinases: A Structural Overview.
Toxins (Basel). 2016 May 17;8(5):155. doi: 10.3390/toxins8050155.
5
Evidence for restricted reactivity of ADAMDEC1 with protein substrates and endogenous inhibitors.
J Biol Chem. 2015 Mar 6;290(10):6620-9. doi: 10.1074/jbc.M114.601724. Epub 2015 Jan 6.
6
Fibronectin fragments and the cleaving enzyme ADAM-8 in the degenerative human intervertebral disc.
Spine (Phila Pa 1976). 2014 Jul 15;39(16):1274-9. doi: 10.1097/BRS.0000000000000397.
7
Genetically Engineered Mouse Models Reveal the Importance of Proteases as Osteoarthritis Drug Targets.
Curr Rheumatol Rep. 2013 Aug;15(8):350. doi: 10.1007/s11926-013-0350-2.

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
REFMAC5 for the refinement of macromolecular crystal structures.
Acta Crystallogr D Biol Crystallogr. 2011 Apr;67(Pt 4):355-67. doi: 10.1107/S0907444911001314. Epub 2011 Mar 18.
4
Molecular replacement with MOLREP.
Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):22-5. doi: 10.1107/S0907444909042589. Epub 2009 Dec 21.
6
ADAM-8 isolated from human osteoarthritic chondrocytes cleaves fibronectin at Ala(271).
Arthritis Rheum. 2009 Sep;60(9):2704-13. doi: 10.1002/art.24753.
9
Discovery of novel hydroxamates as highly potent tumor necrosis factor-alpha converting enzyme inhibitors. Part II: optimization of the S3' pocket.
Bioorg Med Chem Lett. 2008 Nov 1;18(21):5809-14. doi: 10.1016/j.bmcl.2008.09.045. Epub 2008 Sep 13.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验