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巴马司他是一种有效的基质金属蛋白酶抑制剂,具有意想不到的结合模式。

Batimastat, a potent matrix mealloproteinase inhibitor, exhibits an unexpected mode of binding.

作者信息

Botos I, Scapozza L, Zhang D, Liotta L A, Meyer E F

机构信息

Department of Biochemistry and Biophysics, Texas A&M University, College Station, 77843, USA.

出版信息

Proc Natl Acad Sci U S A. 1996 Apr 2;93(7):2749-54. doi: 10.1073/pnas.93.7.2749.

DOI:10.1073/pnas.93.7.2749
PMID:8610113
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC39703/
Abstract

Matrix metalloproteinase enzymes have been implicated in degenerative processes like tumor cell invasion, metastasis, and arthritis. Specific metalloproteinase inhibitors have been used to block tumor cell proliferation. We have examined the interaction of batimastat (BB-94) with a metalloproteinase [atrolysin C (Ht-d), EC 3.4.24.42] active site at 2.0-angstroms resolution (R = 16.8%). The title structure exhibits an unexpected binding geometry, with the thiophene ring deeply inserted into the primary specificity site. This unprecedented binding geometry dramatizes the significance of the cavernous primary specificity site, pointing the way for the design of a new generation of potential antitumor drugs.

摘要

基质金属蛋白酶已被证实与肿瘤细胞侵袭、转移及关节炎等退行性病变过程有关。特异性金属蛋白酶抑制剂已被用于阻断肿瘤细胞增殖。我们以2.0埃的分辨率(R = 16.8%)研究了batimastat(BB - 94)与一种金属蛋白酶[Atrolysin C(Ht - d),EC 3.4.24.42]活性位点的相互作用。标题结构呈现出一种意想不到的结合几何形状,噻吩环深深插入主要特异性位点。这种前所未有的结合几何形状凸显了海绵状主要特异性位点的重要性,为新一代潜在抗肿瘤药物的设计指明了方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/48e970d86f18/pnas01514-0137-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/524e2f4f15c4/pnas01514-0134-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/f6f6ced41c70/pnas01514-0135-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/7a9432de869b/pnas01514-0135-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/c49c5fa6269a/pnas01514-0136-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/48e970d86f18/pnas01514-0137-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/524e2f4f15c4/pnas01514-0134-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/f6f6ced41c70/pnas01514-0135-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/7a9432de869b/pnas01514-0135-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/c49c5fa6269a/pnas01514-0136-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c6e9/39703/48e970d86f18/pnas01514-0137-a.jpg

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1
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2
Structure-based analysis of inhibitor binding to Ht-d.基于结构的抑制剂与Ht-d结合分析。
Acta Crystallogr D Biol Crystallogr. 1995 Jul 1;51(Pt 4):597-604. doi: 10.1107/S0907444995001910.
3
Stromelysin-1: three-dimensional structure of the inhibited catalytic domain and of the C-truncated proenzyme.基质金属蛋白酶-1:被抑制的催化结构域及C端截短的酶原的三维结构。
在人离体腹膜培养模型中,对基质金属蛋白酶2/9进行药物靶向治疗可减少结直肠癌的腹膜转移形成。
Cancers (Basel). 2022 Aug 2;14(15):3760. doi: 10.3390/cancers14153760.
4
Cell mediated remodeling of stiffness matched collagen and fibrin scaffolds.细胞介导的刚度匹配胶原和纤维蛋白支架的重塑。
Sci Rep. 2022 Jul 11;12(1):11736. doi: 10.1038/s41598-022-14953-w.
5
Construction of a Microfluidic Platform With Core-Shell CdSSe@ZnS Quantum Dot-Encoded Superparamagnetic Iron Oxide Microspheres for Screening and Locating Matrix Metalloproteinase-2 Inhibitors From Fruits of .构建一种微流控平台,该平台带有核壳结构的CdSSe@ZnS量子点编码超顺磁性氧化铁微球,用于从[具体水果名称]果实中筛选和定位基质金属蛋白酶-2抑制剂
Front Nutr. 2022 Apr 14;9:869528. doi: 10.3389/fnut.2022.869528. eCollection 2022.
6
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8
Drug-Bearing Supramolecular MMP Inhibitor Nanofibers for Inhibition of Metastasis and Growth of Liver Cancer.载药超分子基质金属蛋白酶抑制剂纳米纤维用于抑制肝癌转移和生长
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Discovering protein-ligand chalcogen bonding in the protein data bank using endocyclic sulfur-containing heterocycles as ligand search subsets.利用含环内硫杂原子的杂环作为配体搜索子集,在蛋白质数据库中发现蛋白-配体的硫属键合。
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4
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8
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9
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10
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