Department of Organic Chemistry, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden.
Carbohydr Res. 2012 Aug 1;357:118-25. doi: 10.1016/j.carres.2012.05.022. Epub 2012 May 28.
We have analyzed the O-antigen polysaccharide of the previously uncharacterized Escherichia coli strain TD2158 which is a host of bacteriophage HK620. This bacteriophage recognizes and cleaves the polysaccharide with its tailspike protein (TSP). The polysaccharide preparation as well as oligosaccharides obtained from HK620TSP endoglycosidase digests were analyzed with NMR spectroscopy. Additionally, sugar analysis was performed on the O-antigen polysaccharide and MALDI-TOF MS was used in oligosaccharide analysis. The present study revealed a heterogeneous polysaccharide with a hexasaccharide repeating unit of the following structure: α-D-Glcp-(1→6|) →2)-α-L-Rhap-91→6)-α-D-Glcp-(1→4)-α-D-Ga|lp-(1→3)-α-D-GlcpNAc-(1→ β-D-Glcp/β-D-GlcpNAc-(1→3) A repeating unit with a D-GlcNAc substitution of D-Gal has been described earlier as characteristic for serogroup O18A1. Accordingly, we termed repeating units with D-Glc substitution at D-Gal as O18A2. NMR analyses of the polysaccharide confirmed that O18A1- and O18A2-type repeats were present in a 1:1 ratio. However, HK620TSP preferentially bound the D-GlcNAc-substituted O18A1-type repeating units in its high affinity binding pocket with a dissociation constant of 140 μM and disfavored the O18A2-type having a β-D-Glcp-(1→3)-linked group. As a result, in hexasaccharide preparations, O18A1 and O18A2 repeats were present in a 9:1 ratio stressing the clear preference of O18A1-type repeats to be cleaved by HK620TSP.
我们分析了以前未被表征的大肠杆菌菌株 TD2158 的 O-抗原多糖,该菌株是噬菌体 HK620 的宿主。这种噬菌体通过其尾部刺突蛋白 (TSP) 识别和切割多糖。用 NMR 光谱法分析了多糖制剂以及来自 HK620TSP 内切糖苷酶消化的寡糖。此外,对 O-抗原多糖进行了糖分析,并在寡糖分析中使用了 MALDI-TOF MS。本研究揭示了一种具有六糖重复单元的异质多糖,其结构如下:α-D-Glcp-(1→6|)→2)-α-L-Rhap-91→6)-α-D-Glcp-(1→4)-α-D-Ga|lp-(1→3)-α-D-GlcpNAc-(1→β-D-Glcp/β-D-GlcpNAc-(1→3)。一个具有 D-GlcNAc 取代 D-Gal 的重复单元,先前被描述为 O18A1 血清组的特征。因此,我们将 D-Gal 处具有 D-Glc 取代的重复单元称为 O18A2。多糖的 NMR 分析证实,O18A1-和 O18A2 型重复单元以 1:1 的比例存在。然而,HK620TSP 在其高亲和力结合口袋中优先结合具有 D-GlcNAc 取代的 O18A1 型重复单元,解离常数为 140 μM,不喜欢具有β-D-Glcp-(1→3)-连接基团的 O18A2 型。因此,在六糖制剂中,O18A1 和 O18A2 重复单元的存在比例为 9:1,这突出表明 O18A1 型重复单元明显优先被 HK620TSP 切割。