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利用虚拟筛选鉴定用于癌症药物的p53- mortalin复合物小分子抑制剂。

Identifications small molecules inhibitor of p53-mortalin complex for cancer drug using virtual screening.

作者信息

Utomo Didik H, Widodo Nashi, Rifa'i M

机构信息

Biology Department, Faculty of Sciences, Brawijaya University, Malang, Indonesia.

出版信息

Bioinformation. 2012;8(9):426-9. doi: 10.6026/97320630008426. Epub 2012 May 15.

Abstract

Mortalin was over expressed in tumor cells and bind to p53 protein. This interaction was suggested to promote sequestration of p53 in the cytoplasm, thereby inhibiting its nuclear activity. The p53 is a tumor suppressor that is essential for the prevention of cancer development and loss of p53 function is one of the early events in immortalization of human cells. Therefore, abrogation p53-mortalin interaction using small molecule is guaranteed stop cancer cell grow. However study interaction of p53-mortalin, and its inhibition using small molecule is still challenging because specific site of mortalin that bind to p53, vice versa, is still debatable. This study has aims to analyze the p53-binding site of mortalin using molecular docking and to screen drug-like compounds that have potential as inhibitors of p53-mortalin interaction using virtual screening. The result showed that the lowest energy binding of p53-mortalin complex is -31.89 kcal/mol, and p53 protein bind to substrate binding domain of mortalin (THR433; VAL435; LEU436; LEU437; PRO442; ILE558; LYS555). Furthermore, the p53-binding domain of mortalin was used as receptor to screen 9000 drug-like compounds from ZINC database using molecular docking program Auto Dock Vina in PyRx 0.8 (Virtual Screening Tools). Here, we have identified three drug-like compounds that are ZINC01019934, ZINC00624418 and ZINC00664532 adequate to interrupt stability of p53-mortalin complex that warrant for anticancer agent.

摘要

mortalin在肿瘤细胞中过度表达并与p53蛋白结合。这种相互作用被认为会促进p53在细胞质中的隔离,从而抑制其核活性。p53是一种肿瘤抑制因子,对预防癌症发展至关重要,p53功能丧失是人类细胞永生化的早期事件之一。因此,使用小分子消除p53-mortalin相互作用有望阻止癌细胞生长。然而,研究p53-mortalin的相互作用及其小分子抑制作用仍然具有挑战性,因为mortalin与p53结合的特定位点(反之亦然)仍存在争议。本研究旨在通过分子对接分析mortalin的p53结合位点,并使用虚拟筛选来筛选具有作为p53-mortalin相互作用抑制剂潜力的类药物化合物。结果表明,p53-mortalin复合物的最低能量结合为-31.89千卡/摩尔,p53蛋白与mortalin的底物结合结构域(THR433;VAL435;LEU436;LEU437;PRO442;ILE558;LYS555)结合。此外,mortalin的p53结合结构域被用作受体,使用PyRx 0.8(虚拟筛选工具)中的分子对接程序Auto Dock Vina从ZINC数据库中筛选9000种类药物化合物。在此,我们鉴定出三种类药物化合物,即ZINC01019934、ZINC00624418和ZINC00664532,它们足以破坏p53-mortalin复合物的稳定性,有望成为抗癌剂。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dcc6/3374373/826da7993406/97320630008426F1.jpg

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