Department of Biochemistry, Virginia Tech, Blacksburg, VA 24061, USA.
Biochemistry. 2012 Jul 31;51(30):5990-6009. doi: 10.1021/bi300113x. Epub 2012 Jul 16.
Alzheimer's disease is a debilitating neurodegenerative disorder whose pathology has been linked to the aggregation and deposition of the amyloid β-peptide (Aβ) in neural tissue. A truly effective therapeutic agent remains elusive, and attention has recently turned to the use of natural products as effective antiaggregation compounds, directly targeting Aβ. Although a wealth of in vitro and in vivo evidence suggests these compounds or their derivatives might be beneficial, a detailed understanding of the mechanism by which they act remains largely unknown. Using atomistic, explicit-solvent molecular dynamics simulations, we have investigated the association of the flavonoid morin with Aβ monomers and dimers. Through 90 simulations totaling 23.65 μs, we found that treatment of Aβ peptides with morin largely does not affect secondary structure content, unless a large molar excess of morin is present. However, in simulations of Aβ monomers and dimers, morin affected the tertiary and quaternary structure of Aβ, even at low concentrations that have been used experimentally. Thus it appears that despite the inability of morin to fully block Aβ aggregation or β-strand formation, we observe structures with altered tertiary and quaternary interactions, which may represent "off-pathway" aggregates that have been proposed previously. The simulations presented here add important new details to the mechanism of these processes.
阿尔茨海默病是一种使人虚弱的神经退行性疾病,其病理学与神经组织中淀粉样 β-肽(Aβ)的聚集和沉积有关。真正有效的治疗药物仍然难以捉摸,最近人们的注意力转向了使用天然产物作为有效的抗聚集化合物,直接针对 Aβ。尽管大量的体外和体内证据表明这些化合物或其衍生物可能有益,但人们对它们作用的机制仍知之甚少。我们使用原子、显式溶剂分子动力学模拟研究了类黄酮棓酸与 Aβ单体和二聚体的结合。通过总共 90 次模拟,总时长为 23.65 μs,我们发现棓酸处理 Aβ 肽在很大程度上不会影响二级结构含量,除非存在大量的棓酸摩尔过量。然而,在 Aβ 单体和二聚体的模拟中,棓酸影响了 Aβ的三级和四级结构,即使在实验中使用的低浓度下也是如此。因此,尽管棓酸不能完全阻止 Aβ 聚集或β-链形成,但我们观察到具有改变的三级和四级相互作用的结构,这可能代表以前提出的“非典型”聚集物。这里提出的模拟为这些过程的机制增加了重要的新细节。