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一个年轻的日本林奇综合征患者中发现的 MLH1 剪接受体位点突变导致的异常剪接。

Aberrant splicing caused by a MLH1 splice donor site mutation found in a young Japanese patient with Lynch syndrome.

机构信息

Department of Clinical Oncology, Institute of Development, Aging and Cancer, and Tohoku University Hospital, Tohoku University, 4-1 Seiryo-machi, Aoba-ku, Sendai, Japan.

出版信息

Fam Cancer. 2012 Dec;11(4):559-64. doi: 10.1007/s10689-012-9547-1.

DOI:10.1007/s10689-012-9547-1
PMID:22766992
Abstract

Lynch syndrome, also known as hereditary non-polyposis colorectal cancer, characterized by predisposition to colorectal cancer and other associated cancers, is an autosomal-dominant disorder mainly caused by germline mutations in DNA mismatch repair (MMR) genes such as MLH1, MSH2, and MSH6. Some mutations that disrupt splice donor or acceptor sites cause aberrant mRNA splicing. These mutations are generally considered as pathogenic ones, however, it is sometimes uneasy to accurately predict their pathogenicity without functional assays, particularly when the mutation is a single nucleotide substitution. In this report, we describe a 25-year-old patient with Lynch syndrome who carries a germline variant in a splice donor site of the MLH1 gene (c.790 + 5 G > T), which was first detected among Asian populations. The immunohistochemical analysis revealed loss of MLH1 protein expression in the tumor. Our splicing assay confirmed that the intronic MLH1 variant actually caused aberrant splicing, supporting its pathogenic effect. Our data accumulate more information on the genotype-phenotype relationships in patients with Lynch syndrome.

摘要

林奇综合征,又称遗传性非息肉病性结直肠癌,其特征为易患结直肠癌和其他相关癌症,是一种常染色体显性遗传疾病,主要由 DNA 错配修复(MMR)基因如 MLH1、MSH2 和 MSH6 的种系突变引起。一些导致剪接受体或供体位点异常的突变会导致异常的 mRNA 剪接。这些突变通常被认为是致病性的,但在没有功能检测的情况下,特别是当突变是单核苷酸取代时,有时难以准确预测其致病性。在本报告中,我们描述了一位 25 岁的林奇综合征患者,其 MLH1 基因(c.790+5G>T)的剪接受体位点存在种系变异,该变异首先在亚洲人群中被发现。免疫组化分析显示肿瘤中 MLH1 蛋白表达缺失。我们的剪接分析证实,内含子 MLH1 变异实际上导致了异常剪接,支持其致病性效应。我们的数据为林奇综合征患者的基因型-表型关系积累了更多信息。

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引用本文的文献

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Immunohistochemistry and RNA-sequencing have been useful in evaluating the pathological significance of a non-consensus site intronic variant in suspected cases of Lynch syndrome.免疫组织化学和RNA测序在评估疑似林奇综合征病例中一个非共识位点内含子变异的病理意义方面很有用。
Int Cancer Conf J. 2021 Mar 6;10(3):186-190. doi: 10.1007/s13691-021-00474-2. eCollection 2021 Jul.

本文引用的文献

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Verification of the three-step model in assessing the pathogenicity of mismatch repair gene variants.验证三步模型在评估错配修复基因变异的致病性中的作用。
Hum Mutat. 2011 Jan;32(1):107-15. doi: 10.1002/humu.21409.
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An intronic mutation in MLH1 associated with familial colon and breast cancer.MLH1 内含子突变与家族性结肠和乳腺癌相关。
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Determination of splice-site mutations in Lynch syndrome (hereditary non-polyposis colorectal cancer) patients using functional splicing assay.利用功能剪接分析检测 Lynch 综合征(遗传性非息肉病性结直肠癌)患者的剪接位点突变。
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A large fraction of unclassified variants of the mismatch repair genes MLH1 and MSH2 is associated with splicing defects.错配修复基因MLH1和MSH2的很大一部分未分类变异与剪接缺陷有关。
Hum Mutat. 2008 Dec;29(12):1412-24. doi: 10.1002/humu.20796.
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Three novel missense germline mutations in different exons of MSH6 gene in Chinese hereditary non-polyposis colorectal cancer families.中国遗传性非息肉病性结直肠癌家系中MSH6基因不同外显子的三种新型错义种系突变。
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In vitro and in silico analysis reveals an efficient algorithm to predict the splicing consequences of mutations at the 5' splice sites.体外和计算机模拟分析揭示了一种预测5'剪接位点突变剪接后果的有效算法。
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