Jones Amanda Lousie
Department of Biology, Food and Nutritional Sciences, School of Life Sciences, Northumbria University, Newcastle upon Tyne, United Kingdom.
Adv Appl Microbiol. 2012;80:23-35. doi: 10.1016/B978-0-12-394381-1.00002-7.
Microbial systematics has always been a misunderstood scientific discipline. It is readily assumed that systematists use antiquated techniques to examine the molecular, morphological, physiological, and biochemical properties of microorganisms. It is also believed that the circumscription of novel taxa is not essential let alone a requirement and it is due to this that systematics has become a dying art. It is rarely appreciated that systematics is a discipline that is essential to all sciences and that without the use of current techniques, descriptions of novel species or higher taxa cannot be correctly published. Since Woese and colleagues first publicized the use of the small subunit ribosomal RNA as a molecular tool, phylogenetic analysis of 16S rRNA gene sequences has become an essential step in the polyphasic approach of microbial systematics. However, this molecular technique has limitations which have become apparent, and therefore it is evident that full genome comparisons are soon going to be a requirement for the full circumscription of novel taxa. The next generation of sequencing technology has enabled more information to be incorporated into the full systematic picture and that is immense as it is only the start of the genomic era. It is hoped that high-throughput sequencing will compliment polyphasic data rather than throwing a different light on it and thus soon become an essential minimal standard for taxonomic descriptions.
微生物系统学一直是一门被误解的科学学科。人们很容易认为,系统学家使用过时的技术来研究微生物的分子、形态、生理和生化特性。还有人认为,划定新的分类单元并非必不可少,更不用说这是一项要求了,正因如此,系统学已成为一门逐渐没落的技艺。很少有人认识到,系统学是一门对所有科学都至关重要的学科,而且如果不使用当前的技术,就无法正确发表新物种或更高分类单元的描述。自从沃斯及其同事首次公布将小亚基核糖体RNA用作分子工具以来,16S rRNA基因序列的系统发育分析已成为微生物系统学多相方法中的一个必要步骤。然而,这种分子技术的局限性已经显现出来,因此很明显,全基因组比较很快将成为划定新分类单元的必要条件。新一代测序技术使更多信息能够融入完整的系统图景中,而且这仅仅是基因组时代的开始,其信息量是巨大的。希望高通量测序能够补充多相数据,而不是对其另作解读,从而很快成为分类描述必不可少的最低标准。