Department of Biology, University of Mississippi, Oxford, MS, USA.
Mycologia. 2013 Jan-Feb;105(1):61-70. doi: 10.3852/12-042. Epub 2012 Jul 16.
We investigated the community composition and diversity of soil fungi along a sharp vegetative ecotone between coastal sage scrub (CSS) and nonnative annual grassland habitat at two sites in coastal California. USA- We pooled soil samples across 29 m transects on either side of the ecotone at each of the two sites, and. using clone libraries of fungal ribosomal DNA, we identified 280 operational taxonomic units (OTUs) from a total 40 g soil. We combined information from partial LSU and ITS sequences and found that the majority of OTUs belonged to the phylum Ascomycota, followed by Basidiomycota. Within the Ascomycota. a quarter of OTUs were Sordariomycetes. 17% were Leotiomycet.es, 16% were Dothideomycetes and the remaining OTUs were distributed among the classes Eurotiomycetes, Pezizomycetes, Lecanoromycetes, Orbiliomycetes and Arthoniomycetes. Within the Basidiomycota. all OTUs but one belonged to the subphylum Agaricomycotina. We also sampled plant communities at the same sites to offer a point of comparison for patterns in richness of fungal communities. Fungal communities had higher alpha and beta diversity than plant communities; fungal communities were approximately 20 times as rich as plant communities and the majority of OTUs were found in single soil samples. Soils harbored a unique mycoflora that did not reveal vegetative boundaries or site differences. High alpha and beta diversity and possible sampling artifacts necessitate extensive sampling to reveal differentiation in these fungal communities.
我们沿着加利福尼亚州沿海两个地点的沿海莎草灌丛(CSS)和非本地一年生草本植物栖息地之间的一个明显植被生态交错带,调查了土壤真菌的群落组成和多样性。我们在生态交错带两侧的每个地点的 29 米长的横截面上混合了土壤样本,使用真菌核糖体 DNA 的克隆文库,我们从总共 40 克土壤中鉴定出了 280 个操作分类单位(OTU)。我们结合了 LSU 和 ITS 序列的部分信息,发现大多数 OTU 属于子囊菌门,其次是担子菌门。在子囊菌门中,四分之一的 OTU 是 Sordariomycetes,17%是 Leotiomycet.es,16%是 Dothideomycetes,其余的 OTU 分布在 Eurotiomycetes、Pezizomycetes、Lecanoromycetes、Orbiliomycetes 和 Arthoniomycetes 等类别中。在担子菌门中,除了一个 OTU 外,所有 OTU 都属于 Agaricomycotina 亚门。我们还在同一地点对植物群落进行了采样,以提供真菌群落丰富度模式的比较点。真菌群落的 alpha 和 beta 多样性高于植物群落;真菌群落的丰富度大约是植物群落的 20 倍,大多数 OTU 仅在单个土壤样本中发现。土壤中存在独特的真菌群落,没有显示出植被边界或地点差异。高 alpha 和 beta 多样性以及可能的采样伪影需要进行广泛的采样,以揭示这些真菌群落的分化。