Institute of Molecular and Cell Biology, Singapore, Singapore.
Epigenetics. 2012 Aug;7(8):815-22. doi: 10.4161/epi.21140. Epub 2012 Jul 19.
A direct effect of post-translational modifications (PTMs) on nucleosomes is the formation of a dynamic platform able to assemble the transcriptional machinery and to recruit chromatin modifiers. The histone code hypothesis suggests that histone PTMs can act as binding sites for chromatin readers and effector proteins, such as the bromodomains, that selectively interact with acetylated lysines, or the "Royal family" and the PHD finger domains, which are able to recognize methylated arginines and lysines. In this review we will discuss recent data describing the function of WD40 proteins as a new class of histone readers, with particular emphasis on the ones able to recognize methylated arginine and lysine residues. We will discuss how WDR5, a classical seven-bladed WD40 propeller, is able to bind with similar affinities both the catalytic subunit of the Trithorax-like complexes, and the histone H3 tail either unmodified or symmetrically dimethylated on arginine 2 (H3R2me2s). Furthermore, we will speculate on how these mutually exclusive interactions of WDR5 may play a role in mediating different degrees of H3K4 methylations at both promoters and distal regulatory sites. Finally, we will summarize recent literature elucidating how other WD40 proteins such as NURF55, EED and LRWD1 recognize methylated histone tails, highlighting similarities and differences among them.
组蛋白翻译后修饰(PTMs)直接影响核小体,形成一个动态平台,能够组装转录机器并招募染色质修饰物。组蛋白密码假说表明,组蛋白 PTMs 可以作为染色质阅读器和效应蛋白(如溴结构域)的结合位点,这些阅读器和效应蛋白选择性地与乙酰化赖氨酸相互作用,或与“皇家家族”和 PHD 指结构域相互作用,这些结构域能够识别甲基化的精氨酸和赖氨酸。在这篇综述中,我们将讨论描述 WD40 蛋白作为一类新的组蛋白阅读器的功能的最新数据,特别强调能够识别甲基化精氨酸和赖氨酸残基的 WD40 蛋白。我们将讨论经典的七叶 WD40 类 propeller 蛋白 WDR5 如何能够以相似的亲和力结合三结构域类似物(Trithorax-like complexes)的催化亚基,以及未修饰或精氨酸 2 位对称二甲基化的组蛋白 H3 尾(H3R2me2s)。此外,我们将推测 WDR5 的这些相互排斥的相互作用如何在介导启动子和远端调控位点的不同程度的 H3K4 甲基化中发挥作用。最后,我们将总结最近的文献,阐明其他 WD40 蛋白(如 NURF55、EED 和 LRWD1)如何识别甲基化的组蛋白尾巴,突出它们之间的相似性和差异。