Department of Physics and Optical Science, University of North Carolina Charlotte, Charlotte, NC 28262, USA.
Proteins. 2012 Dec;80(12):2701-10. doi: 10.1002/prot.24155. Epub 2012 Sep 15.
Upon ATP binding, myosin motor protein is found in two alternative conformations, prerecovery state M* and postrecovery state M**. The transition from one state to the other, known as the recovery stroke, plays a key role in the myosin functional cycle. Despite much recent research, the microscopic details of this transition remain elusive. A critical step in the recovery stroke is the rotation of the converter domain from "up" position in prerecovery state to "down" position in postrecovery state that leads to the swing of the lever arm attached to it. In this work, we demonstrate that the two rotational states of the converter domain are determined by the interactions within a small structural motif in the force-generating region of the protein that can be accurately modeled on computers using atomic representation and explicit solvent. Our simulations show that the transition between the two states is controlled by a small helix (SH1) located next to the relay helix and relay loop. A small translation in the position of SH1 away from the relay helix is seen to trigger the transition from "up" state to "down" state. The transition is driven by a cluster of hydrophobic residues I687, F487, and F506 that make significant contributions to the stability of both states. The proposed mechanism agrees well with the available structural and mutational studies.
在 ATP 结合后,肌球蛋白马达蛋白呈现两种替代构象,预恢复状态 M和后恢复状态 M*。从一种状态到另一种状态的转变,称为恢复冲程,在肌球蛋白功能循环中起着关键作用。尽管最近进行了大量研究,但这种转变的微观细节仍然难以捉摸。恢复冲程中的一个关键步骤是转换器结构域从预恢复状态的“向上”位置旋转到后恢复状态的“向下”位置,从而导致与其相连的杠杆臂的摆动。在这项工作中,我们证明了转换器结构域的两种旋转状态是由蛋白质的力产生区域中的一个小结构模体内部的相互作用决定的,可以使用原子表示和显式溶剂在计算机上进行精确建模。我们的模拟表明,两种状态之间的转变受位于中继螺旋和中继环旁边的小螺旋 (SH1) 控制。SH1 位置相对于中继螺旋的小平移被观察到触发从“向上”状态到“向下”状态的转变。这种转变是由一组疏水性残基 I687、F487 和 F506 驱动的,它们对两种状态的稳定性都有重要贡献。提出的机制与现有的结构和突变研究非常吻合。