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分辨率为4.0埃的山羊乳铁蛋白的结晶与结构测定:乳铁蛋白晶体中一种具有高溶剂含量的新堆积形式。

Crystallization and structure determination of goat lactoferrin at 4.0 A resolution: a new form of packing in lactoferrins with a high solvent content in crystals.

作者信息

Kumar Pravindra, Yadav Savita, Singh Tej P

机构信息

Department of Biophysics, All India Institute of Medical Sciences, New Delhi 110 029.

出版信息

Indian J Biochem Biophys. 2002 Feb;39(1):16-21.

Abstract

Lactoferrin was purified from fresh samples of goat colostrums, saturated with Fe3+ and CO3(2-) ions and crystallized by microdialysis method. The crystals belong to orthorhombic space group P2(1)2(1)2(1) with a=104.6 A, b=153.8 A, c=155.1 A and Z=4. The quality of crystals was poor, thus the intensity data were restricted to 4.0 A resolution only. The structure was determined by molecular replacement method using diferric buffalo lactoferrin as a model. The solution clearly indicated the presence of one molecule in the asymmetric unit, which corresponds to a Vm value of 7.1 A3/Da. The structure was refined with stringent constraints to an R-factor of 0.246 using all the reflections 15,870 to 4.0 A resolution. The overall structure of goat lactoferrin is essentially similar to those of buffalo and bovine lactoferrins. However, the iron-binding environment in goat lactoferrin is somewhat different, in which 2 CO3(2-). ions have low occupancies. The solvent content of approximately 84% was very high in the present case which explains the fragility of the crystals of goat lactoferrin. In a way, it is very surprising that the crystals grow at all, although crystals with solvent as high as 89% have been reported.

摘要

乳铁蛋白从新鲜的山羊初乳样品中纯化出来,用Fe3+和CO3(2-)离子饱和,并通过微透析法结晶。晶体属于正交晶系空间群P2(1)2(1)2(1),a = 104.6 Å,b = 153.8 Å,c = 155.1 Å,Z = 4。晶体质量较差,因此强度数据仅限制在4.0 Å分辨率。结构通过分子置换法确定,使用双铁水牛乳铁蛋白作为模型。该溶液清楚地表明在不对称单元中存在一个分子,这对应于7.1 Å3/Da的Vm值。使用15870个从15,870到4.0 Å分辨率的所有反射,通过严格约束将结构精修至R因子为0.246。山羊乳铁蛋白的整体结构与水牛和牛乳铁蛋白的基本相似。然而,山羊乳铁蛋白中铁结合环境有所不同,其中2个CO3(2-)离子占有率较低。在当前情况下,约84%的溶剂含量非常高,这解释了山羊乳铁蛋白晶体的易碎性。在某种程度上,尽管已报道过溶剂含量高达89%的晶体,但晶体竟然还能生长,这非常令人惊讶。

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