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目前人类基因组选择的放松:嗅觉受体上有害突变的宽容。

Current relaxation of selection on the human genome: tolerance of deleterious mutations on olfactory receptors.

机构信息

Center for Molecular Medicine and Genetics, Wayne State University School of Medicine, Detroit, MI 48201, USA.

出版信息

Mol Phylogenet Evol. 2013 Feb;66(2):558-64. doi: 10.1016/j.ympev.2012.07.032. Epub 2012 Aug 10.

Abstract

Knowledge and understanding about the selective pressures that have shaped present human genetic diversity have dramatically increased in the last few years in parallel with the availability of large genomic datasets. The release of large datasets composed of millions of SNPs across hundreds of genomes by HAPMAP, the Human Genome Diversity Panel, and other projects has led to considerable effort to detect selection signals across the nuclear genome (Coop et al., 2009; Lopez Herraez et al., 2009; Sabeti et al., 2006, 2007; Voight et al., 2006). Most of the research has focused on positive selection forces although other selective forces, such as negative selection, may have played a substantive role on the shape of our genome. Here we studied the selective strengths acting presently on the genome by making computational predictions of the pathogenicity of nonsynonymous protein mutations and interpreting the distribution of scores in terms of selection. We could show that the genetic diversity for all the major pathways is still constrained by negative selection in all 11 human populations studied. In a single exception, we observed a relaxation of negative selection acting on olfactory receptors. Since a decreased number of functioning olfactory receptors in human compared with other primates had already been shown, this suggests that the role of olfactory receptors for survival and reproductive success has decreased during human evolution. By showing that negative selection is still relaxed, the present results imply that no plateau of minimal function has yet been reached in modern humans and therefore that olfactory capability might still be decreasing. This is a first clue to present human evolution.

摘要

近年来,随着大型基因组数据集的出现,人们对塑造当今人类遗传多样性的选择压力的认识和理解有了显著提高。HAPMAP、人类基因组多样性面板和其他项目发布了包含数百个人类基因组中数百万个单核苷酸多态性的大型数据集,这促使人们对核基因组中的选择信号进行了大量检测(Coop 等人,2009;Lopez Herraez 等人,2009;Sabeti 等人,2006,2007;Voight 等人,2006)。尽管其他选择压力,如负选择,可能对我们的基因组形状起到了实质性的作用,但大多数研究都集中在正选择力量上。在这里,我们通过对非同义蛋白突变的致病性进行计算预测,并根据选择来解释分数分布,从而研究了目前作用于基因组的选择强度。我们可以证明,在所研究的 11 个人类群体中,所有主要途径的遗传多样性仍然受到负选择的限制。只有一个例外,我们观察到嗅觉受体上的负选择作用有所放松。由于已经证明人类的嗅觉受体数量比其他灵长类动物减少,这表明在人类进化过程中,嗅觉受体对生存和繁殖成功的作用已经减弱。通过表明负选择仍然是放松的,目前的结果意味着现代人类尚未达到最小功能的高原,因此嗅觉能力可能仍在下降。这是人类进化的第一个线索。

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