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4
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Bioinformatics. 2011 Jul 15;27(14):2023-4. doi: 10.1093/bioinformatics/btr315. Epub 2011 May 26.
5
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Cell. 2007 Oct 5;131(1):174-87. doi: 10.1016/j.cell.2007.08.003.
6
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Genome Biol. 2002;3(12):RESEARCH0088. doi: 10.1186/gb-2002-3-12-research0088. Epub 2002 Dec 23.
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