马萨利放线菌 4401292T 株的基因组草案序列。
Draft genome sequence of Actinomyces massiliensis strain 4401292T.
机构信息
Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes, UMR CNRS 6236-IRD 198, Faculté de Médecine, Aix-Marseille Université, Marseille, France.
出版信息
J Bacteriol. 2012 Sep;194(18):5121. doi: 10.1128/JB.01039-12.
Abstract
A draft genome sequence of Actinomyces massiliensis, an anaerobic bacterium isolated from a patient's blood culture, is described here. CRISPR-associated proteins, insertion sequences, and toxin-antitoxin loci were found on the genome.
摘要
本文描述了从患者血液培养物中分离出的厌氧细菌马萨利西亚放线菌的基因组草图序列。在基因组上发现了 CRISPR 相关蛋白、插入序列和毒素-抗毒素基因座。
相似文献
1
Draft genome sequence of Actinomyces massiliensis strain 4401292T.马萨利放线菌 4401292T 株的基因组草案序列。
J Bacteriol. 2012 Sep;194(18):5121. doi: 10.1128/JB.01039-12.
2
Draft genome sequences of Actinomyces timonensis strain 7400942T and its prophage.放线菌属提蒙尼斯菌株 7400942T 及其原噬菌体的基因组草案序列。
J Bacteriol. 2012 Dec;194(23):6613-4. doi: 10.1128/JB.01730-12.
3
Actinomyces massiliensis sp. nov., isolated from a patient blood culture.马西利亚放线菌新种，从一名患者的血培养物中分离得到。
Int J Syst Evol Microbiol. 2009 Mar;59(Pt 3):540-4. doi: 10.1099/ijs.0.001503-0.
4
Actinomyces hongkongensis sp. nov. a novel Actinomyces species isolated from a patient with pelvic actinomycosis.香港放线菌新种：从一名盆腔放线菌病患者分离出的一种新型放线菌。
Syst Appl Microbiol. 2003 Nov;26(4):518-22. doi: 10.1078/072320203770865819.
5
Actinomyces graevenitzii bacteremia in a patient with alcoholic liver cirrhosis.酒精性肝硬化患者感染伴放线聚集杆菌血症。
Anaerobe. 2011 Apr;17(2):87-9. doi: 10.1016/j.anaerobe.2011.03.002. Epub 2011 Mar 21.
6
Identification by 16S rRNA gene sequencing of an Actinomyces hongkongensis isolate recovered from a patient with pelvic actinomycosis.16S rRNA 基因测序鉴定从盆腔放线菌病患者中分离出的一株嗜胨放线菌。
J Clin Microbiol. 2013 Aug;51(8):2721-3. doi: 10.1128/JCM.00509-13. Epub 2013 May 22.
7
Actinomyces marimammalium sp. nov., from marine mammals.海栖哺乳动物放线菌新种，源自海栖哺乳动物。
Int J Syst Evol Microbiol. 2001 Jan;51(Pt 1):151-156. doi: 10.1099/00207713-51-1-151.
8
Photo Quiz: Isolation of an Unusual Gram-Positive Coccus from a Positive Blood Culture in a Patient with Pneumonia. Actinomyces radicidentis Bacteremia.病例讨论：从一名肺炎患者的阳性血培养中分离出一种不寻常的革兰氏阳性球菌。齿龈放线菌血症。
J Clin Microbiol. 2016 Jan;54(1):1, 247. doi: 10.1128/JCM.masthead.54-1.
9
Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov., previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963.内氏放线菌的修订描述以及口腔放线菌新种、约翰逊放线菌新种的描述，这两种菌之前被鉴定为内氏放线菌基因种1、2和WVA 963。
Int J Syst Evol Microbiol. 2009 Mar;59(Pt 3):509-16. doi: 10.1099/ijs.0.000950-0.
10
Actinomyces graevenitzii sp. nov., isolated from human clinical specimens.格氏放线菌新种，从人类临床标本中分离得到。
Int J Syst Bacteriol. 1997 Jul;47(3):885-8. doi: 10.1099/00207713-47-3-885.
引用本文的文献
1
Genome sequence and description of Actinomyces polynesiensis str. MS2 sp. nov. isolated from the human gut.从人类肠道分离出的多西链霉菌MS2菌株（Actinomyces polynesiensis str. MS2 sp. nov.）的基因组序列及描述
New Microbes New Infect. 2016 Mar 23;12:1-5. doi: 10.1016/j.nmni.2016.02.014. eCollection 2016 Jul.
本文引用的文献
1
RNA-guided genetic silencing systems in bacteria and archaea.细菌和古菌中的 RNA 引导的基因沉默系统。
Nature. 2012 Feb 15;482(7385):331-8. doi: 10.1038/nature10886.
2
CharProtDB: a database of experimentally characterized protein annotations.CharProtDB：一个经过实验验证的蛋白质注释数据库。
Nucleic Acids Res. 2012 Jan;40(Database issue):D237-41. doi: 10.1093/nar/gkr1133. Epub 2011 Dec 2.
3
The Pfam protein families database.Pfam 蛋白质家族数据库。
Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301. doi: 10.1093/nar/gkr1065. Epub 2011 Nov 29.
4
Toxin-antitoxin systems in bacteria and archaea.细菌和古菌中的毒素-抗毒素系统。
Annu Rev Genet. 2011;45:61-79. doi: 10.1146/annurev-genet-110410-132412.
5
UniProt Knowledgebase: a hub of integrated protein data.UniProt 知识库：一个集成蛋白质数据的中心。
Database (Oxford). 2011 Mar 29;2011:bar009. doi: 10.1093/database/bar009. Print 2011.
6
Actinomyces massiliensis sp. nov., isolated from a patient blood culture.马西利亚放线菌新种，从一名患者的血培养物中分离得到。
Int J Syst Evol Microbiol. 2009 Mar;59(Pt 3):540-4. doi: 10.1099/ijs.0.001503-0.
7
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
8
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.ARAGORN，一个用于在核苷酸序列中检测tRNA基因和tmRNA基因的程序。
Nucleic Acids Res. 2004 Jan 2;32(1):11-6. doi: 10.1093/nar/gkh152. Print 2004.
9
The COG database: a tool for genome-scale analysis of protein functions and evolution.COG数据库：一种用于蛋白质功能和进化的基因组规模分析的工具。
Nucleic Acids Res. 2000 Jan 1;28(1):33-6. doi: 10.1093/nar/28.1.33.
10
Basic local alignment search tool.基本局部比对搜索工具
J Mol Biol. 1990 Oct 5;215(3):403-10. doi: 10.1016/S0022-2836(05)80360-2.
Zotero 插件