Nano-Science Center, Department of Chemistry, University of Copenhagen , Universitetsparken 5, DK-2300 Copenhagen Ø, Denmark.
Biochemistry. 2012 Oct 9;51(40):8039-46. doi: 10.1021/bi301096a. Epub 2012 Sep 28.
The active site for the family GH38 class II α-mannosidase is constituted in part by a divalent metal ion, mostly Zn(2+), as revealed in the crystal structures of enzymes from both animal and bacterial sources. The metal ion coordinates to the bound substrate and side chains of conserved amino acid residues. Recently, evidence has accumulated that class II α-mannosidase is active in complex with a range of divalent metal ions. In the present work, with employment of the class II α-mannosidase, ManA, from the hyperthermophilic archaeon Sulfolobus solfataricus, we explored the influence of the divalent metal ion on the associated steady-state kinetic parameters, K(M) and k(cat), for various substrates. With p-nitrophenyl-α-d-mannoside as a substrate, the enzyme showed activity in the presence of Co(2+), Cd(2+), Mn(2+), and Zn(2+), whereas Ni(2+) and Cu(2+) were inhibitory and nonactivating. Co(2+) was the preferred metal ion, with a k(cat)/K(M) value of about 120 mM(-1) s(-1), 6 times higher than that with Cd(2+) and Zn(2+) and 10 times higher than that with Mn(2+). With α-1,2-, α-1,3-, α-1,4-, or α-1,6-mannobiose as a substrate, Co(2+) was the only metal ion promoting hydrolysis of all substrates; however, Mn(2+), Cd(2+), and Zn(2+) could substitute to a varying extent. A change in the divalent metal ion generally affected the K(M) for the hydrolysis of p-nitrophenyl-α-d-mannoside; however, changes in both k(cat) and K(M) for the hydrolysis of α-mannobioses were observed, along with changing preferences for the glycosidic linkage. Finally, it was found that the metal ion and substrate bind in that order via a steady-state, ordered, sequential mechanism.
家族 GH38 类 II α-甘露糖苷酶的活性部位部分由二价金属离子组成,主要是 Zn(2+),这一点在动物和细菌来源的酶的晶体结构中得到了揭示。金属离子与结合的底物和保守氨基酸残基的侧链配位。最近,有证据表明,II 类α-甘露糖苷酶在与一系列二价金属离子形成复合物时具有活性。在本工作中,我们利用来自嗜热古菌 Sulfolobus solfataricus 的 II 类α-甘露糖苷酶 ManA,研究了二价金属离子对各种底物相关稳态动力学参数 K(M)和 k(cat)的影响。以对硝基苯-α-d-甘露糖苷为底物时,该酶在 Co(2+)、Cd(2+)、Mn(2+)和 Zn(2+)存在下具有活性,而 Ni(2+)和 Cu(2+)则具有抑制和非激活作用。Co(2+)是首选金属离子,k(cat)/K(M)值约为 120 mM(-1)s(-1),比 Cd(2+)和 Zn(2+)高 6 倍,比 Mn(2+)高 10 倍。以α-1,2-、α-1,3-、α-1,4-或α-1,6-甘露二糖为底物时,Co(2+)是唯一能促进所有底物水解的金属离子;然而,Mn(2+)、Cd(2+)和 Zn(2+)可以在不同程度上替代。二价金属离子的变化通常会影响 p-硝基苯-α-d-甘露糖苷水解的 K(M);然而,α-甘露糖苷水解的 k(cat)和 K(M)都发生了变化,糖苷键的偏好也发生了变化。最后,发现金属离子和底物通过稳态、有序、顺序机制依次结合。