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Expansion of protein farnesyltransferase specificity using "tunable" active site interactions: development of bioengineered prenylation pathways.利用“可调谐”活性位点相互作用扩展蛋白质法尼基转移酶特异性:生物工程化异戊二烯化途径的开发
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2
Targeted reengineering of protein geranylgeranyltransferase type I selectivity functionally implicates active-site residues in protein-substrate recognition.对I型蛋白质香叶基香叶基转移酶选择性进行靶向改造在功能上表明活性位点残基参与蛋白质-底物识别。
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3
Amino acid residues that define both the isoprenoid and CAAX preferences of the Saccharomyces cerevisiae protein farnesyltransferase. Creating the perfect farnesyltransferase.定义酿酒酵母蛋白质法尼基转移酶的类异戊二烯和CAAX偏好性的氨基酸残基。打造完美的法尼基转移酶。
J Biol Chem. 1998 Apr 17;273(16):9472-9. doi: 10.1074/jbc.273.16.9472.
4
Crystallographic analysis of CaaX prenyltransferases complexed with substrates defines rules of protein substrate selectivity.与底物复合的CaaX异戊二烯基转移酶的晶体学分析确定了蛋白质底物选择性的规则。
J Mol Biol. 2004 Oct 15;343(2):417-33. doi: 10.1016/j.jmb.2004.08.056.
5
Protein farnesyltransferase.蛋白质法尼基转移酶
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Efficient farnesylation of an extended C-terminal C() sequence motif expands the scope of the prenylated proteome.高效的 C 末端 C()序列基序法尼基化扩展了法尼基化蛋白质组的范围。
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7
Cocrystal structure of protein farnesyltransferase complexed with a farnesyl diphosphate substrate.与法尼基二磷酸底物复合的蛋白质法尼基转移酶的共晶体结构。
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Conversion of protein farnesyltransferase to a geranylgeranyltransferase.蛋白质法尼基转移酶向香叶基香叶基转移酶的转化。
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Interplay of isoprenoid and peptide substrate specificity in protein farnesyltransferase.蛋白质法尼基转移酶中类异戊二烯和肽底物特异性的相互作用。
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The chaperone SmgGDS-607 has a dual role, both activating and inhibiting farnesylation of small GTPases.伴侣蛋白 SmgGDS-607 具有双重作用,既能激活又能抑制小分子 GTP 酶的法尼基化。
J Biol Chem. 2019 Aug 2;294(31):11793-11804. doi: 10.1074/jbc.RA119.007438. Epub 2019 Jun 13.

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Protein Isoprenylation in Yeast Targets COOH-Terminal Sequences Not Adhering to the CaaX Consensus.酵母蛋白异戊烯化作用靶向不符合 CaaX 共识的 COOH-末端序列。
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Efficient farnesylation of an extended C-terminal C() sequence motif expands the scope of the prenylated proteome.高效的 C 末端 C()序列基序法尼基化扩展了法尼基化蛋白质组的范围。
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7
Towards the systematic mapping and engineering of the protein prenylation machinery in Saccharomyces cerevisiae.迈向酿酒酵母中蛋白质异戊二烯化机制的系统图谱绘制与工程改造
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8
Engineering protein farnesyltransferase for enzymatic protein labeling applications.用于酶促蛋白质标记应用的工程化蛋白质法尼基转移酶。
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9
Rapid analysis of protein farnesyltransferase substrate specificity using peptide libraries and isoprenoid diphosphate analogues.利用肽库和类异戊二烯二磷酸类似物快速分析蛋白质法尼基转移酶的底物特异性
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本文引用的文献

1
Targeting protein prenylation for cancer therapy.针对蛋白异戊烯化治疗癌症。
Nat Rev Cancer. 2011 Oct 24;11(11):775-91. doi: 10.1038/nrc3151.
2
Identification of a novel class of farnesylation targets by structure-based modeling of binding specificity.通过基于结构的结合特异性建模鉴定新型法尼基转移酶靶标。
PLoS Comput Biol. 2011 Oct;7(10):e1002170. doi: 10.1371/journal.pcbi.1002170. Epub 2011 Oct 6.
3
Multispecific recognition: mechanism, evolution, and design.多特异性识别:机制、进化与设计。
Biochemistry. 2011 Feb 8;50(5):602-11. doi: 10.1021/bi101563v. Epub 2011 Jan 13.
4
Engineering thrombin for selective specificity toward protein C and PAR1.工程化凝血酶以选择性识别蛋白 C 和 PAR1。
J Biol Chem. 2010 Jun 18;285(25):19145-52. doi: 10.1074/jbc.M110.119875. Epub 2010 Apr 19.
5
Enzyme promiscuity: a mechanistic and evolutionary perspective.酶的多功能性:一种机制和进化的观点。
Annu Rev Biochem. 2010;79:471-505. doi: 10.1146/annurev-biochem-030409-143718.
6
A tagging-via-substrate approach to detect the farnesylated proteome using two-dimensional electrophoresis coupled with Western blotting.一种基于底物的标签方法,用于通过二维电泳结合 Western blot 检测法尼基化蛋白质组。
Mol Cell Proteomics. 2010 Apr;9(4):742-51. doi: 10.1074/mcp.M900597-MCP200. Epub 2010 Jan 26.
7
Synthesis and screening of a CaaL peptide library versus FTase reveals a surprising number of substrates.针对法尼基转移酶(FTase)合成并筛选 CaaL 肽文库,揭示了数量惊人的底物。
Bioorg Med Chem Lett. 2010 Jan 15;20(2):767-70. doi: 10.1016/j.bmcl.2009.11.011. Epub 2009 Nov 12.
8
Identification of novel peptide substrates for protein farnesyltransferase reveals two substrate classes with distinct sequence selectivities.蛋白质法尼基转移酶新型肽底物的鉴定揭示了具有不同序列选择性的两类底物。
J Mol Biol. 2010 Jan 8;395(1):176-90. doi: 10.1016/j.jmb.2009.10.038. Epub 2009 Oct 28.
9
Differential requirement of CAAX-mediated posttranslational processing for Rheb localization and signaling.CAAX 介导的翻译后加工对 Rheb 定位和信号转导的差异需求。
Oncogene. 2010 Jan 21;29(3):380-91. doi: 10.1038/onc.2009.336. Epub 2009 Oct 19.
10
Analysis of the eukaryotic prenylome by isoprenoid affinity tagging.通过类异戊二烯亲和标记分析真核生物异戊二烯组。
Nat Chem Biol. 2009 Apr;5(4):227-35. doi: 10.1038/nchembio.149. Epub 2009 Feb 15.

利用“可调谐”活性位点相互作用扩展蛋白质法尼基转移酶特异性:生物工程化异戊二烯化途径的开发

Expansion of protein farnesyltransferase specificity using "tunable" active site interactions: development of bioengineered prenylation pathways.

机构信息

Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, USA.

出版信息

J Biol Chem. 2012 Nov 2;287(45):38090-100. doi: 10.1074/jbc.M112.404954. Epub 2012 Sep 19.

DOI:10.1074/jbc.M112.404954
PMID:22992747
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3488079/
Abstract

Post-translational modifications play essential roles in regulating protein structure and function. Protein farnesyltransferase (FTase) catalyzes the biologically relevant lipidation of up to several hundred cellular proteins. Site-directed mutagenesis of FTase coupled with peptide selectivity measurements demonstrates that molecular recognition is determined by a combination of multiple interactions. Targeted randomization of these interactions yields FTase variants with altered and, in some cases, bio-orthogonal selectivity. We demonstrate that FTase specificity can be "tuned" using a small number of active site contacts that play essential roles in discriminating against non-substrates in the wild-type enzyme. This tunable selectivity extends in vivo, with FTase variants enabling the creation of bioengineered parallel prenylation pathways with altered substrate selectivity within a cell. Engineered FTase variants provide a novel avenue for probing both the selectivity of prenylation pathway enzymes and the effects of prenylation pathway modifications on the cellular function of a protein.

摘要

翻译后修饰在调节蛋白质结构和功能方面发挥着重要作用。蛋白质法尼基转移酶(FTase)催化多达数百种细胞蛋白质的生物学相关脂化反应。FTase的定点诱变与肽选择性测量相结合表明,分子识别是由多种相互作用共同决定的。对这些相互作用进行靶向随机化产生了具有改变的、在某些情况下具有生物正交选择性的FTase变体。我们证明,可以使用少量在野生型酶中区分非底物时起关键作用的活性位点接触来“调整”FTase的特异性。这种可调节的选择性在体内也能发挥作用,FTase变体能够在细胞内创建具有改变的底物选择性的生物工程平行异戊二烯化途径。工程化的FTase变体为探究异戊二烯化途径酶的选择性以及异戊二烯化途径修饰对蛋白质细胞功能的影响提供了一条新途径。