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DNA 功能化纳米胶体相图的定量预测。

Quantitative prediction of the phase diagram of DNA-functionalized nanosized colloids.

机构信息

Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United Kingdom.

出版信息

Phys Rev Lett. 2012 Jun 29;108(26):268301. doi: 10.1103/PhysRevLett.108.268301. Epub 2012 Jun 25.

DOI:10.1103/PhysRevLett.108.268301
PMID:23005018
Abstract

We present a coarse-grained model of DNA-functionalized colloids that is computationally tractable. Importantly, the model parameters are solely based on experimental data. Using this highly simplified model, we can predict the phase behavior of DNA-functionalized nanocolloids without assuming pairwise additivity of the intercolloidal interactions. Our simulations show that, for nanocolloids, the assumption of pairwise additivity leads to substantial errors in the estimate of the free energy of the crystal phase. We compare our results with available experimental data and find that the simulations predict the correct structure of the solid phase and yield a very good estimate of the melting temperature. Current experimental estimates for the contour length and persistence length of single-stranded (ss) DNA sequences are subject to relatively large uncertainties. Using the best available estimates, we obtain predictions for the crystal lattice constants that are off by a few percent: this indicates that more accurate experimental data on ssDNA are needed to exploit the full power of our coarse-grained approach.

摘要

我们提出了一个粗粒化模型,用于处理经 DNA 功能化的胶体,该模型在计算上具有可操作性。重要的是,模型参数仅基于实验数据。使用这个高度简化的模型,我们可以预测 DNA 功能化纳米胶体的相行为,而无需假设胶体间相互作用的可加性。我们的模拟表明,对于纳米胶体,假设可加性会导致晶体相自由能的估计出现实质性误差。我们将结果与现有的实验数据进行比较,发现模拟预测了固相的正确结构,并对熔点给出了非常好的估计。目前关于单链 (ss) DNA 序列的轮廓长度和持久长度的实验估计存在相对较大的不确定性。使用现有的最佳估计值,我们得到的晶体晶格常数的预测值有几个百分点的偏差:这表明需要更精确的 ssDNA 实验数据来充分利用我们的粗粒化方法的全部优势。

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引用本文的文献

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2
Colloidal fibers and rings by cooperative assembly.胶态纤维和环的协同组装。
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Binary nanoparticle superlattices of soft-particle systems.软粒子体系的二元纳米粒子超晶格
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Applications of synchrotron-based spectroscopic techniques in studying nucleic acids and nucleic acid-functionalized nanomaterials.基于同步加速器的光谱技术在研究核酸及核酸功能化纳米材料中的应用。
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Hydrodynamics selects the pathway for displacive transformations in DNA-linked colloidal crystallites.水动力选择了连接胶体晶体中离散转变的途径。
Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4803-8. doi: 10.1073/pnas.1318012111. Epub 2014 Mar 17.