School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, UK.
J Phys Chem B. 2012 Nov 15;116(45):13308-19. doi: 10.1021/jp307442f. Epub 2012 Oct 31.
Hydrogen bonding between glutamine residues has been identified as playing an important role in the intermolecular association and aggregation of proteins. To establish the molecular mechanisms of glutamine interactions, neutron diffraction coupled with hydrogen/deuterium isotopic substitution in combination with computational modeling has been used to investigate the structure and hydration of glutamine in aqueous solution. The final structures obtained are consistent with the experimental data and provide insight into the hydrogen-bonding ability of glutamine. We find that the backbone of glutamine is able to coordinate more water molecules than the side chain, suggesting that charged groups on the glutamine molecule are more successful in attracting water than the dipole in the side chain. In both the backbone and the side chain, we find that the carbonyl groups interact more readily with water molecules than the amine groups. We find that glutamine-glutamine interactions are present, despite their low concentration in this dilute solution. This is evidenced through the occurrence of dimers of glutamine molecules in the solution, demonstrating the effective propensity of this molecule to associate through backbone-backbone, backbone-side chain, and side chain-side chain hydrogen bond interactions. The formation of dimers of glutamine molecules in such a dilute solution (30 mg/mL glutamine) may have implications in the aggregation of glutamine-rich proteins in neurological diseases where aggregation is prevalent.
氢键作用被认为在蛋白质的分子间相互作用和聚集过程中起着重要作用。为了确定谷氨酰胺相互作用的分子机制,采用中子衍射结合氢/氘同位素取代与计算建模相结合的方法,研究了水溶液中谷氨酰胺的结构和水合作用。最终得到的结构与实验数据一致,为谷氨酰胺的氢键能力提供了深入的了解。我们发现,谷氨酰胺的主链能够与比侧链更多的水分子配位,这表明谷氨酰胺分子上的带电基团比侧链上的偶极子更能成功地吸引水分子。在主链和侧链中,我们发现羰基与水分子的相互作用比胺基更容易。我们发现尽管在这种稀溶液中浓度很低,但谷氨酰胺-谷氨酰胺相互作用仍然存在。这可以通过溶液中谷氨酰胺分子二聚体的出现来证明,表明这种分子通过主链-主链、主链-侧链和侧链-侧链氢键相互作用有效倾向于缔合。在如此稀的溶液(30mg/mL 谷氨酰胺)中形成谷氨酰胺分子的二聚体可能会对神经疾病中富含谷氨酰胺的蛋白质聚集产生影响,因为在这些疾病中聚集现象很普遍。