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通过计算机设计 N 端取代工程化耐热性进入米曲霉来源的嗜温性家族 11 木聚糖酶。

Engineering hyperthermostability into a mesophilic family 11 xylanase from Aspergillus oryzae by in silico design of N-terminus substitution.

机构信息

School of Medicine and Pharmaceutics, Jiangnan University, 1800 Lihu Road, Wuxi, Jiangsu 214122, PR China.

出版信息

Biotechnol Bioeng. 2013 Apr;110(4):1028-38. doi: 10.1002/bit.24768. Epub 2012 Nov 1.

Abstract

A mesophilic xylanase from Aspergillus oryzae CICC40186 (abbreviated to AoXyn11A) belongs to glycoside hydrolase family 11. The thermostability of AoXyn11A was significantly improved by substituting its N-terminus with the corresponding region of a hyperthermostable family 11 xylanase, EvXyn11(TS) . The suitable N-terminus of AoXyn11A to be replaced was selected by the comparison of B-factors between AoXyn11A and EvXyn11(TS) , which were generated and calculated after a 15 ns molecular dynamic (MD) simulation process. Then, the predicted hybrid xylanase (designated AEx11A) was modeled, and subjected to a 2 ns MD simulation process for calculating its total energy value. The N-terminus substitution was confirmed by comparing the total energy value of AEx11A with that of AoXyn11A. Based on the in silico design, the AEx11A was constructed and expressed in Pichia pastoris GS115. After 72 h of methanol induction, the recombinant AEx11A (reAEx11A) activity reached 82.2 U/mL. The apparent temperature optimum of reAEx11A was 80°C, much higher than that of reAoXyn11A. Its half-life was 197-fold longer than that of reAoXyn11A at 70°C. Compared with reAoXyn11A, the reAEx11A displayed a slight alteration in K(m) but a decrease in V(max).

摘要

一株米曲霉 CICC40186(简称 AoXyn11A)来源的嗜温木聚糖酶属于糖苷水解酶家族 11。通过用热稳定性更高的家族 11 木聚糖酶 EvXyn11(TS)的相应区域替换其 N 端,AoXyn11A 的热稳定性得到显著提高。通过比较 AoXyn11A 和 EvXyn11(TS)的 B 因子,选择了适合替换 AoXyn11A 的 N 端。这是在经过 15ns 分子动力学(MD)模拟过程后生成和计算的。然后,对预测的杂交木聚糖酶(命名为 AEx11A)进行建模,并进行 2ns MD 模拟过程以计算其总能量值。通过比较 AEx11A 的总能量值与 AoXyn11A 的总能量值来确认 N 端替换。基于计算机设计,构建并在毕赤酵母 GS115 中表达了 AEx11A。甲醇诱导 72 小时后,重组 AEx11A(reAEx11A)的酶活达到 82.2U/mL。reAEx11A 的表观最适温度为 80°C,明显高于 reAoXyn11A。其半衰期在 70°C 时比 reAoXyn11A 长 197 倍。与 reAoXyn11A 相比,reAEx11A 的 K(m)略有改变,但 V(max)降低。

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