College of Agriculture, Northeast Agricultural University, No. 59 Mucai Street, Xiangfang District, Harbin, 150030, People's Republic of China.
Antonie Van Leeuwenhoek. 2013 Feb;103(2):293-8. doi: 10.1007/s10482-012-9809-9. Epub 2012 Nov 1.
A novel actinomycete, designated strain NEAU-M9(T), was isolated from soybean root (Glycine max (L.) Merr) and characterized using a polyphasic approach. 16S rRNA gene sequence similarity studies showed that strain NEAU-M9(T) belonged to the genus Actinoplanes, being most closely related to Actinoplanes campanulatus DSM 43148(T) (98.85 %), Actinoplanes capillaceus DSM 44859(T) (98.70 %), Actinoplanes lobatus DSM 43150(T) (98.30 %), Actinoplanes auranticolor DSM 43031(T) (98.23 %) and Actinoplanes sichuanensis 03-723(T) (98.06 %); similarity to other type strains of the genus Actinoplanes ranged from 95.87 to 97.56 %. The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that the isolate formed a distinct phyletic line with A. campanulatus DSM 43148(T) and A. capillaceus DSM 44859(T). This branching pattern was also supported by the tree constructed with the maximum-likelihood method. However, the low level of DNA-DNA relatedness allowed the isolate to be differentiated from the above-mentioned two Actinoplanes species. Moreover, strain NEAU-M9(T) could also be distinguished from the most closely related species by morphological, physiological and characteristics. Therefore, it is proposed that strain NEAU-M9(T) represents a novel Actinoplanes species, Actinoplanes hulinensis sp. nov. The type strain of Actinoplanes hulinensis is NEAU-M9(T) (= CGMCC 4.7036(T) = DSM 45728(T)).
一株新型放线菌,命名为 NEAU-M9(T) 菌株,从大豆根(Glycine max (L.) Merr)中分离得到,并通过多相分类方法进行了特征描述。16S rRNA 基因序列相似性研究表明,NEAU-M9(T) 菌株属于游动放线菌属,与 Actinoplanes campanulatus DSM 43148(T)(98.85%)、Actinoplanes capillaceus DSM 44859(T)(98.70%)、Actinoplanes lobatus DSM 43150(T)(98.30%)、Actinoplanes auranticolor DSM 43031(T)(98.23%)和 Actinoplanes sichuanensis 03-723(T)(98.06%)最为相似;与该属其他模式菌株的相似性范围为 95.87%至 97.56%。基于 16S rRNA 基因序列的系统发育分析表明,该分离株与 Actinoplanes campanulatus DSM 43148(T) 和 A. capillaceus DSM 44859(T) 形成了一个独特的进化枝。这种分支模式也得到了最大似然法构建的系统发育树的支持。然而,低水平的 DNA-DNA 同源性允许该分离株与上述两种游动放线菌物种区分开来。此外,NEAU-M9(T) 菌株还可以通过形态学、生理学和特性与最密切相关的物种区分开来。因此,建议将 NEAU-M9(T) 菌株命名为一株新型游动放线菌,命名为 Actinoplanes hulinensis sp. nov.。Actinoplanes hulinensis 的模式菌株为 NEAU-M9(T)=CGMCC 4.7036(T)=DSM 45728(T)。