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黄单胞菌属 hulinensis 新种,从大豆根(Glycine max (L.)Merr)中分离得到的一种新型放线菌。

Actinoplanes hulinensis sp. nov., a novel actinomycete isolated from soybean root (Glycine max (L.) Merr).

机构信息

College of Agriculture, Northeast Agricultural University, No. 59 Mucai Street, Xiangfang District, Harbin, 150030, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2013 Feb;103(2):293-8. doi: 10.1007/s10482-012-9809-9. Epub 2012 Nov 1.

Abstract

A novel actinomycete, designated strain NEAU-M9(T), was isolated from soybean root (Glycine max (L.) Merr) and characterized using a polyphasic approach. 16S rRNA gene sequence similarity studies showed that strain NEAU-M9(T) belonged to the genus Actinoplanes, being most closely related to Actinoplanes campanulatus DSM 43148(T) (98.85 %), Actinoplanes capillaceus DSM 44859(T) (98.70 %), Actinoplanes lobatus DSM 43150(T) (98.30 %), Actinoplanes auranticolor DSM 43031(T) (98.23 %) and Actinoplanes sichuanensis 03-723(T) (98.06 %); similarity to other type strains of the genus Actinoplanes ranged from 95.87 to 97.56 %. The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that the isolate formed a distinct phyletic line with A. campanulatus DSM 43148(T) and A. capillaceus DSM 44859(T). This branching pattern was also supported by the tree constructed with the maximum-likelihood method. However, the low level of DNA-DNA relatedness allowed the isolate to be differentiated from the above-mentioned two Actinoplanes species. Moreover, strain NEAU-M9(T) could also be distinguished from the most closely related species by morphological, physiological and characteristics. Therefore, it is proposed that strain NEAU-M9(T) represents a novel Actinoplanes species, Actinoplanes hulinensis sp. nov. The type strain of Actinoplanes hulinensis is NEAU-M9(T) (= CGMCC 4.7036(T) = DSM 45728(T)).

摘要

一株新型放线菌,命名为 NEAU-M9(T) 菌株,从大豆根(Glycine max (L.) Merr)中分离得到,并通过多相分类方法进行了特征描述。16S rRNA 基因序列相似性研究表明,NEAU-M9(T) 菌株属于游动放线菌属,与 Actinoplanes campanulatus DSM 43148(T)(98.85%)、Actinoplanes capillaceus DSM 44859(T)(98.70%)、Actinoplanes lobatus DSM 43150(T)(98.30%)、Actinoplanes auranticolor DSM 43031(T)(98.23%)和 Actinoplanes sichuanensis 03-723(T)(98.06%)最为相似;与该属其他模式菌株的相似性范围为 95.87%至 97.56%。基于 16S rRNA 基因序列的系统发育分析表明,该分离株与 Actinoplanes campanulatus DSM 43148(T) 和 A. capillaceus DSM 44859(T) 形成了一个独特的进化枝。这种分支模式也得到了最大似然法构建的系统发育树的支持。然而,低水平的 DNA-DNA 同源性允许该分离株与上述两种游动放线菌物种区分开来。此外,NEAU-M9(T) 菌株还可以通过形态学、生理学和特性与最密切相关的物种区分开来。因此,建议将 NEAU-M9(T) 菌株命名为一株新型游动放线菌,命名为 Actinoplanes hulinensis sp. nov.。Actinoplanes hulinensis 的模式菌株为 NEAU-M9(T)=CGMCC 4.7036(T)=DSM 45728(T)。

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