Department of Genetics, University of Georgia, Athens, GA 30602, USA.
J Hered. 2012 Nov-Dec;103(6):887-97. doi: 10.1093/jhered/ess063. Epub 2012 Nov 4.
Genetic datasets can be used to date evolutionary events, even on recent time scales if sufficient data are available. We used statistics calculated from multilocus microsatellite datasets to estimate population ages in data generated through coalescent simulations and in samples from populations of known age in a metapopulation of Daphnia magna in Finland. Our simulation results show that age estimates improve with additional loci and define a time frame over which these statistics are most useful. On the most recent time scales, assumptions regarding the model of mutation (infinite sites vs. stepwise mutation) have little influence on estimated ages. In older populations, size homoplasy among microsatellite alleles results in a downwards bias for estimates based on the infinite sites model (ISM). In the Finnish D. magna metapopulation, our genetically derived estimated ages were biased upwards. Potential sources of this bias include the underlying model of mutation, gene flow, founder size, and the possibility of persistent source populations in the system. Our simulated data show that genetic age estimation is possible, even for very young populations, but our empirical data highlight the importance of factors such as migration when these statistics are applied in natural populations.
遗传数据集可用于推断进化事件的发生时间,如果有足够的数据,即使是在近期的时间尺度上也可以。我们使用来自多基因微卫星数据集的统计数据来估计通过合并模拟产生的数据和芬兰大弹涂鱼复合种群中具有已知年龄的种群样本中的群体年龄。我们的模拟结果表明,年龄估计随着附加的基因座而提高,并定义了这些统计数据最有用的时间段。在最近的时间尺度上,关于突变模型(无限位点与逐步突变)的假设对估计年龄的影响很小。在较老的群体中,微卫星等位基因之间的大小同形导致基于无限位点模型(ISM)的估计值向下偏倚。在芬兰的大弹涂鱼复合种群中,我们通过遗传得出的估计年龄偏高。这种偏差的潜在来源包括突变的基础模型、基因流、建群者大小以及系统中持续存在的源种群的可能性。我们的模拟数据表明,即使对于非常年轻的群体,遗传年龄估计也是可能的,但我们的实证数据强调了在自然种群中应用这些统计数据时,诸如迁移等因素的重要性。