Department of Molecular Evolution, Center of Astrobiology (INTA-CSIC), Torrejón de Ardoz, Madrid, Spain.
PLoS One. 2012;7(11):e48716. doi: 10.1371/journal.pone.0048716. Epub 2012 Nov 2.
Extracellular DNA (eDNA) release is a widespread capacity described in many microorganisms. We identified and characterized lysis-independent eDNA production in an undomesticated strain of Bacillus subtilis. DNA fragments are released during a short time in late-exponential phase. The released eDNA corresponds to whole genome DNA, and does not harbour mutations suggesting that is not the result of error prone DNA synthesis. The absence of eDNA was linked to a spread colony morphology, which allowed a visual screening of a transposon library to search for genes involved in its production. Transposon insertions in genes related to quorum sensing and competence (oppA, oppF and comXP) and to DNA metabolism (mfd and topA) were impaired in eDNA release. Mutants in early competence genes such as comA and srfAA were also defective in eDNA while in contrast mutations in late competence genes as those for the DNA uptake machinery had no effect. A subpopulation of cells containing more DNA is present in the eDNA producing strains but absent from the eDNA defective strain. Finally, competent B. subtilis cells can be transformed by eDNA suggesting it could be used in horizontal gene transfer and providing a rationale for the molecular link between eDNA release and early-competence in B. subtilis that we report.
细胞外 DNA(eDNA)的释放是许多微生物中广泛存在的一种能力。我们在一株未经驯化的枯草芽孢杆菌中鉴定并描述了不依赖裂解的 eDNA 产生。在指数晚期的短时间内释放 DNA 片段。释放的 eDNA 对应于全基因组 DNA,并且没有突变,这表明它不是易错 DNA 合成的结果。eDNA 的缺失与扩展的菌落形态有关,这使得可以通过转座子文库的视觉筛选来搜索参与其产生的基因。与群体感应和感受态(oppA、oppF 和 comXP)以及 DNA 代谢(mfd 和 topA)相关的基因中的转座子插入在 eDNA 释放中受到了损害。早期感受态基因 comA 和 srfAA 的突变体在 eDNA 释放中也有缺陷,而相反的,DNA 摄取机制的晚期感受态基因的突变则没有影响。在产生 eDNA 的菌株中存在含有更多 DNA 的细胞亚群,但在缺乏 eDNA 的菌株中不存在。最后,eDNA 产生菌株中的感受态枯草芽孢杆菌细胞可以被 eDNA 转化,这表明它可以用于水平基因转移,并为我们报道的枯草芽孢杆菌中 eDNA 释放与早期感受态之间的分子联系提供了依据。