Department of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322-0300, United States.
Acc Chem Res. 2013 Feb 19;46(2):280-8. doi: 10.1021/ar3001316. Epub 2012 Nov 7.
Among a wide range of noncovalent interactions, hydrogen (H) bonds are well known for their specific roles in various chemical and biological phenomena. When describing conventional hydrogen bonding, researchers use the notation AH···D (where A refers to the electron acceptor and D to the donor). However, the AH molecule engaged in a AH···D H-bond can also be pivoted around by roughly 180°, resulting in a HA···D arrangement. Even without the H atom in a bridging position, this arrangement can be attractive, as explained in this Account. The electron density donated by D transfers into a AH σ* antibonding orbital in either case: the lobe of the σ* orbital near the H atom in the H-bonding AH···D geometry, or the lobe proximate to the A atom in the HA···D case. A favorable electrostatic interaction energy between the two molecules supplements this charge transfer. When A belongs to the pnictide family of elements, which include phosphorus, arsenic, antimony, and bismuth, this type of interaction is called a pnicogen bond. This bonding interaction is somewhat analogous to the chalcogen and halogen bonds that arise when A is an element in group 16 or 17, respectively, of the periodic table. Electronegative substitutions, such as a F for a H atom opposite the electron donor atom, strengthen the pnicogen bond. For example, the binding energy in FH(2)P···NH(3) greatly exceeds that of the paradigmatic H-bonding water dimer. Surprisingly, di- or tri-halogenation does not produce any additional stabilization, in marked contrast to H-bonds. Chalcogen and halogen bonds show similar strength to the pnicogen bond for a given electron-withdrawing substituent. This insensitivity to the electron-acceptor atom distinguishes these interactions from H-bonds, in which energy depends strongly upon the identity of the proton-donor atom. As with H-bonds, pnicogen bonds can extract electron density from the lone pairs of atoms on the partner molecule, such as N, O, and S. The π systems of carbon chains can donate electron density in pnicogen bonds. Indeed, the strength of A···π pnicogen bonds exceeds that of H-bonds even when using strong proton donors such as water with the same π system. H-bonds typically have a high propensity for a linear AH···D arrangement, but pnicogen bonds show an even greater degree of anisotropy. Distortions of pnicogen bonds away from their preferred geometry cause a more rapid loss of stability than in H-bonds. Although often observed in dimers in the gas phase, pnicogen bonds also serve as the glue in larger aggregates, and researchers have found them in a number of diffraction studies of crystals.
在广泛的非共价相互作用中,氢键以其在各种化学和生物现象中的特殊作用而闻名。在描述传统氢键时,研究人员使用 AH···D 的符号表示(其中 A 表示电子受体,D 表示供体)。然而,参与 AH···D 氢键的 AH 分子也可以绕大约 180°旋转,从而形成 HA···D 排列。即使氢键中的 H 原子不在桥接位置,这种排列也可能是吸引人的,正如本综述中所解释的那样。在这两种情况下,D 供体捐献的电子密度都会转移到 AH σ反键轨道中:氢键 AH···D 几何形状中 H 原子附近的 σ轨道的叶瓣,或 HA···D 情况下靠近 A 原子的叶瓣。两个分子之间有利的静电相互作用能补充了这种电荷转移。当 A 属于磷族元素时,这种相互作用称为磷键。这种键合相互作用与当 A 是元素周期表第 16 或 17 族中的元素时出现的卤键和硫键有些类似。例如,F 取代电子供体原子对面的 H 原子会增强磷键。例如,在 FH(2)P···NH(3)中,结合能大大超过了典范的氢键水二聚体。令人惊讶的是,与氢键不同,二卤化或三卤化不会产生任何额外的稳定化作用。对于给定的吸电子取代基,硫键和卤键与磷键的强度相似。这种对电子受体原子的不敏感性将这些相互作用与氢键区分开来,氢键的能量强烈依赖于质子供体原子的身份。与氢键一样,磷键可以从伙伴分子的孤对原子中提取电子密度,例如 N、O 和 S。碳链的π 系统可以在磷键中捐献电子密度。事实上,即使使用具有相同π 系统的强质子供体如水,A···π 磷键的强度也超过了氢键。氢键通常具有 AH···D 排列的高线性倾向,但磷键具有更大的各向异性。偏离其首选几何形状的磷键的变形会导致比氢键更快的稳定性损失。尽管在气相中的二聚体中经常观察到,但磷键也作为更大聚集体的胶,研究人员在许多晶体的衍射研究中发现了它们。