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NMR 分析 8 残基发夹和 14 残基三股 β-折叠肽中跨链芳环相互作用。

NMR analysis of cross strand aromatic interactions in an 8 residue hairpin and a 14 residue three stranded β-sheet peptide.

机构信息

Molecular Biophysics Unit, Indian Institute of Science, Bangalore, India 560012.

出版信息

J Phys Chem B. 2012 Dec 13;116(49):14207-15. doi: 10.1021/jp3034769. Epub 2012 Dec 3.

DOI:10.1021/jp3034769
PMID:23163345
Abstract

Cross strand aromatic interactions between a facing pair of phenylalanine residues in antiparallel β-sheet structures have been probed using two structurally defined model peptides. The octapeptide Boc-LFV(D)P(L)PLFV-OMe (peptide 1) favors the β-hairpin conformation nucleated by the type II' β-turn formed by the (D)Pro-(L)Pro segment, placing Phe2 and Phe7 side chains in proximity. Two centrally positioned (D)Pro-(L)Pro segments facilitate the three stranded β-sheet formation in the 14 residue peptide Boc-LFV(D)P(L)PLFVA(D)P(L)PLFV-OMe (peptide 2) in which the Phe2/Phe7 orientations are similar to that in the octapeptide. The anticipated folded conformations of peptides 1 and 2 are established by the delineation of intramolecularly hydrogen bonded NH groups and by the observation of specific cross strand NOEs. The observation of ring current shifted aromatic protons is a diagnostic of close approach of the Phe2 and Phe7 side chains. Specific assignment of aromatic proton resonances using HSQC and HSQC-TOCSY methods allow an analysis of interproton NOEs between the spatially proximate aromatic rings. This approach facilitates specific assignments in systems containing multiple aromatic rings in spectra at natural abundance. Evidence is presented for a dynamic process which invokes a correlated conformational change about the C(α)-C(β)(χ(1)) bond for the pair of interacting Phe residues. NMR results suggest that aromatic ring orientations observed in crystals are maintained in solution. Anomalous temperature dependence of ring current induced proton chemical shifts suggests that solvophobic effects may facilitate aromatic ring clustering in apolar solvents.

摘要

使用两个结构确定的模型肽研究了反平行β-折叠结构中面对面排列的一对苯丙氨酸残基之间的跨链芳族相互作用。八肽 Boc-LFV(D)P(L)PLFV-OMe(肽 1)有利于由(D)Pro-(L)Pro 段形成的 II'型β-转角核的β-发夹构象,使 Phe2 和 Phe7 侧链接近。两个中央定位的(D)Pro-(L)Pro 段促进了 14 残基肽 Boc-LFV(D)P(L)PLFVA(D)P(L)PLFV-OMe(肽 2)中三股β-折叠的形成,其中 Phe2/Phe7 取向类似于八肽。通过描述分子内氢键 NH 基团和观察特定的跨链 NOE 来确定肽 1 和 2 的预期折叠构象。芳族质子的环电流位移是 Phe2 和 Phe7 侧链接近的诊断。使用 HSQC 和 HSQC-TOCSY 方法对芳基质子共振的特定分配允许分析空间接近的芳环之间的质子间 NOE。这种方法在含有多个芳环的系统中在自然丰度的光谱中有助于特定分配。提出了证据表明,对于相互作用的 Phe 残基对,存在涉及 C(α)-C(β)(χ(1))键的相关构象变化的动态过程。NMR 结果表明,在晶体中观察到的芳环取向在溶液中得以维持。环电流诱导质子化学位移的异常温度依赖性表明,溶剂化效应可能有利于非极性溶剂中芳环的聚集。

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