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来自罗伊氏乳杆菌121的α-1,6/α-1,4特异性葡聚糖蔗糖酶GTFA的结构

Structure of the α-1,6/α-1,4-specific glucansucrase GTFA from Lactobacillus reuteri 121.

作者信息

Pijning Tjaard, Vujičić-Žagar Andreja, Kralj Slavko, Dijkhuizen Lubbert, Dijkstra Bauke W

机构信息

Laboratory of Biophysical Chemistry, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Dec 1;68(Pt 12):1448-54. doi: 10.1107/S1744309112044168. Epub 2012 Nov 14.

Abstract

The reuteransucrase GTFA from Lactobacillus reuteri 121, which belongs to glycosyl hydrolase family GH70, synthesizes branched α-glucans with both α-1,6- and α-1,4-glycosidic linkages (reuteran) from sucrose. The crystal structure of GTFA-ΔN, a 118 kDa fragment of GTFA comprising residues 745-1763 and including the catalytic domain, was determined at 3.6 Å resolution by molecular replacement. The crystals have large solvent channels and an unusually high solvent content of 85%. GTFA-ΔN has the same domain arrangement and domain topologies as observed in previously determined GH70 glucansucrase structures. The architecture of the GTFA-ΔN active site and binding pocket confirms that glucansucrases have a conserved substrate specificity for sucrose. However, this first crystal structure of an α-1,6/α-1,4-specific glucansucrase shows that residues from conserved sequence motif IV (1128-1136 in GTFA-ΔN) contribute to the acceptor-binding subsites and that they display differences compared with other structurally characterized glucansucrases. In particular, the structure clarifies the importance of residues following the transition-state stabilizer for product specificity, and especially residue Asn1134, which is in a position to interact with sugar units in acceptor subsite +2.

摘要

来自罗伊氏乳杆菌121的路透糖基转移酶GTFA属于糖基水解酶家族GH70,它能利用蔗糖合成具有α-1,6-和α-1,4-糖苷键的支链α-葡聚糖(路透聚糖)。通过分子置换法,以3.6 Å的分辨率测定了GTFA-ΔN的晶体结构,GTFA-ΔN是GTFA的一个118 kDa片段,包含745-1763位残基,包括催化结构域。晶体具有较大的溶剂通道,溶剂含量异常高,达85%。GTFA-ΔN具有与先前测定的GH70葡聚糖蔗糖酶结构中观察到的相同的结构域排列和结构域拓扑结构。GTFA-ΔN活性位点和结合口袋的结构证实了葡聚糖蔗糖酶对蔗糖具有保守的底物特异性。然而,这种α-1,6/α-1,4特异性葡聚糖蔗糖酶的首个晶体结构表明,保守序列基序IV(GTFA-ΔN中的1128-1136位)中的残基有助于受体结合亚位点,并且与其他结构特征明确的葡聚糖蔗糖酶相比,它们存在差异。特别是,该结构阐明了过渡态稳定剂之后的残基对产物特异性的重要性,尤其是Asn1134残基,它能够与受体亚位点+2中的糖单元相互作用。

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Structure of the α-1,6/α-1,4-specific glucansucrase GTFA from Lactobacillus reuteri 121.来自罗伊氏乳杆菌121的α-1,6/α-1,4特异性葡聚糖蔗糖酶GTFA的结构
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Dec 1;68(Pt 12):1448-54. doi: 10.1107/S1744309112044168. Epub 2012 Nov 14.

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