产细菌素乳球菌 DCC43 的基因组序列。
Genome sequence of the bacteriocin-producing strain Lactococcus garvieae DCC43.
机构信息
Department of Chemistry, Biotechnology and Food Science, Laboratory of Microbial Gene Technology and Food Microbiology, Norwegian University of Life Sciences, UMB, Ås, Norway.
出版信息
J Bacteriol. 2012 Dec;194(24):6976-7. doi: 10.1128/JB.01864-12.
Abstract
This work describes the draft genome sequence of Lactococcus garvieae DCC43. The 2.2-Mb draft genome contains 2,227 predicted protein-coding genes, among which is a region encoding the bacteriocin garvicin ML. No antibiotic resistance genes or capsule-related virulence genes were identified. Two plasmid replication regions indicate that this strain likely contains plasmids. Comparative genomics suggests that this strain displays a high degree of sequence variation from the previously sequenced L. garvieae strains.
摘要
本工作描述了乳球菌 DCC43 的基因组草图序列。该 2.2-Mb 基因组草图包含 2,227 个预测的蛋白编码基因，其中包括编码细菌素 garvicin ML 的区域。未鉴定出抗生素抗性基因或荚膜相关毒力基因。两个质粒复制区表明该菌株可能含有质粒。比较基因组学表明，与先前测序的乳球菌菌株相比，该菌株显示出高度的序列变异。
相似文献
1
Genome sequence of the bacteriocin-producing strain Lactococcus garvieae DCC43.
J Bacteriol. 2012 Dec;194(24):6976-7. doi: 10.1128/JB.01864-12.
2
Characterization of garvicin ML, a novel circular bacteriocin produced by Lactococcus garvieae DCC43, isolated from mallard ducks (Anas platyrhynchos).
Appl Environ Microbiol. 2011 Jan;77(1):369-73. doi: 10.1128/AEM.01173-10. Epub 2010 Nov 5.
3
Genome sequence of Lactococcus garvieae IPLA 31405, a bacteriocin-producing, tetracycline-resistant strain isolated from a raw-milk cheese.
J Bacteriol. 2012 Sep;194(18):5118-9. doi: 10.1128/JB.00975-12.
4
Garvicin A, a novel class IId bacteriocin from Lactococcus garvieae that inhibits septum formation in L. garvieae strains.
Appl Environ Microbiol. 2013 Jul;79(14):4336-46. doi: 10.1128/AEM.00830-13. Epub 2013 May 10.
5
Functional genetic analysis of the GarML gene cluster in Lactococcus garvieae DCC43 gives new insights into circular bacteriocin biosynthesis.
J Bacteriol. 2014 Mar;196(5):911-9. doi: 10.1128/JB.01115-13. Epub 2013 Dec 13.
6
Garvieacin Q, a novel class II bacteriocin from Lactococcus garvieae BCC 43578.
Appl Environ Microbiol. 2012 Mar;78(5):1619-23. doi: 10.1128/AEM.06891-11. Epub 2011 Dec 30.
7
Novel Group of Leaderless Multipeptide Bacteriocins from Gram-Positive Bacteria.
Appl Environ Microbiol. 2016 Aug 15;82(17):5216-24. doi: 10.1128/AEM.01094-16. Print 2016 Sep 1.
8
Genome sequences of Lactococcus garvieae TB25, isolated from Italian cheese, and Lactococcus garvieae LG9, isolated from Italian rainbow trout.
J Bacteriol. 2012 Mar;194(5):1249-50. doi: 10.1128/JB.06655-11.
9
The Plasmid Complement of the Cheese Isolate Lactococcus garvieae IPLA 31405 Revealed Adaptation to the Dairy Environment.
PLoS One. 2015 May 5;10(5):e0126101. doi: 10.1371/journal.pone.0126101. eCollection 2015.
10
Raffinocyclicin is a novel plasmid-encoded circular bacteriocin produced by with broad-spectrum activity against many gram-positive food pathogens.
Appl Environ Microbiol. 2024 Sep 18;90(9):e0080924. doi: 10.1128/aem.00809-24. Epub 2024 Aug 27.
引用本文的文献
1
Several New Putative Bacterial ADP-Ribosyltransferase Toxins Are Revealed from In Silico Data Mining, Including the Novel Toxin Vorin, Encoded by the Fire Blight Pathogen .
Toxins (Basel). 2020 Dec 11;12(12):792. doi: 10.3390/toxins12120792.
2
Detection of virulence-related genes in Lactococcus garvieae and their expression in response to different conditions.
Folia Microbiol (Praha). 2018 May;63(3):291-298. doi: 10.1007/s12223-017-0566-z. Epub 2017 Nov 13.
3
Novel Group of Leaderless Multipeptide Bacteriocins from Gram-Positive Bacteria.
Appl Environ Microbiol. 2016 Aug 15;82(17):5216-24. doi: 10.1128/AEM.01094-16. Print 2016 Sep 1.
4
Lactococcus garvieae: a small bacteria and a big data world.
Health Inf Sci Syst. 2015 Feb 24;3(Suppl 1 HISA Big Data in Biomedicine and Healthcare 2013 Con):S5. doi: 10.1186/2047-2501-3-S1-S5. eCollection 2015.
5
Genome Sequence and Transcriptome Analysis of Meat-Spoilage-Associated Lactic Acid Bacterium Lactococcus piscium MKFS47.
Appl Environ Microbiol. 2015 Jun;81(11):3800-11. doi: 10.1128/AEM.00320-15. Epub 2015 Mar 27.
6
Lactococcus garvieae: where is it from? A first approach to explore the evolutionary history of this emerging pathogen.
PLoS One. 2013 Dec 31;8(12):e84796. doi: 10.1371/journal.pone.0084796. eCollection 2013.
7
Functional genetic analysis of the GarML gene cluster in Lactococcus garvieae DCC43 gives new insights into circular bacteriocin biosynthesis.
J Bacteriol. 2014 Mar;196(5):911-9. doi: 10.1128/JB.01115-13. Epub 2013 Dec 13.
8
Global transcriptome analysis of Lactococcus garvieae strains in response to temperature.
PLoS One. 2013 Nov 4;8(11):e79692. doi: 10.1371/journal.pone.0079692. eCollection 2013.
本文引用的文献
1
Genome sequence of Lactococcus garvieae IPLA 31405, a bacteriocin-producing, tetracycline-resistant strain isolated from a raw-milk cheese.
J Bacteriol. 2012 Sep;194(18):5118-9. doi: 10.1128/JB.00975-12.
2
Characterization of plasmids in a human clinical strain of Lactococcus garvieae.
PLoS One. 2012;7(6):e40119. doi: 10.1371/journal.pone.0040119. Epub 2012 Jun 29.
3
The maltose ABC transporter in Lactococcus lactis facilitates high-level sensitivity to the circular bacteriocin garvicin ML.
Antimicrob Agents Chemother. 2012 Jun;56(6):2908-15. doi: 10.1128/AAC.00314-12. Epub 2012 Mar 12.
4
Genome sequences of Lactococcus garvieae TB25, isolated from Italian cheese, and Lactococcus garvieae LG9, isolated from Italian rainbow trout.
J Bacteriol. 2012 Mar;194(5):1249-50. doi: 10.1128/JB.06655-11.
5
Complete genome sequence and comparative analysis of the fish pathogen Lactococcus garvieae.
PLoS One. 2011;6(8):e23184. doi: 10.1371/journal.pone.0023184. Epub 2011 Aug 4.
6
Genome sequence of Lactococcus garvieae 8831, isolated from rainbow trout lactococcosis outbreaks in Spain.
J Bacteriol. 2011 Aug;193(16):4263-4. doi: 10.1128/JB.05326-11. Epub 2011 Jun 17.
7
Genome sequence of Lactococcus garvieae 21881, isolated in a case of human septicemia.
J Bacteriol. 2011 Aug;193(15):4033-4. doi: 10.1128/JB.05090-11. Epub 2011 May 27.
8
Genome sequence of Lactococcus garvieae UNIUD074, isolated in Italy from a lactococcosis outbreak.
J Bacteriol. 2011 Jul;193(14):3684-5. doi: 10.1128/JB.05210-11. Epub 2011 May 20.
9
Primary infective spondylodiscitis caused by Lactococcus garvieae and a review of human L. garvieae infections.
Infection. 2011 Jun;39(3):259-64. doi: 10.1007/s15010-011-0094-8. Epub 2011 Mar 20.
10
Characterization of garvicin ML, a novel circular bacteriocin produced by Lactococcus garvieae DCC43, isolated from mallard ducks (Anas platyrhynchos).
Appl Environ Microbiol. 2011 Jan;77(1):369-73. doi: 10.1128/AEM.01173-10. Epub 2010 Nov 5.
Zotero 插件