School of Molecular Biosciences, Washington State University, Pullman, WA 99163, USA.
Gene. 2013 Feb 15;515(1):128-39. doi: 10.1016/j.gene.2012.11.010. Epub 2012 Dec 6.
Homologous recombination (HR) is a major pathway for the repair of double-strand DNA breaks, a highly deleterious form of DNA damage. The main catalytic protein in HR is the essential RecA-family recombinase, which is conserved across all three domains of life. Eukaryotes and archaea encode varying numbers of proteins paralogous to their main recombinase. Although there is increasing evidence for the functions of some of these paralog proteins, overall their mechanism of action remains largely unclear. Here we present the first biochemical characterization of one of the paralog proteins, SsoRal3, from the crenarchaeaon Sulfolobus solfataricus. The SsoRal3 protein is a ssDNA-dependent ATPase that can catalyze strand invasion at both saturating and subsaturating concentrations. It can bind both ssDNA and dsDNA, but its binding preference is altered by the presence or absence of ATP. Addition of SsoRal3 to SsoRadA nucleoprotein filaments reduces total ATPase activity. Subsaturating concentrations of SsoRal3 increase the ssDNA binding activity of SsoRadA approximately 9-fold and also increase the persistence of SsoRadA catalyzed strand invasion products. Overall, these results suggest that SsoRal3 functions to stabilize the SsoRadA presynaptic filament.
同源重组 (HR) 是修复双链 DNA 断裂的主要途径,双链 DNA 断裂是一种高度有害的 DNA 损伤形式。HR 的主要催化蛋白是必需的 RecA 家族重组酶,它在所有三个生命领域中都被保守。真核生物和古菌编码数量不等的与主要重组酶同源的蛋白。尽管越来越多的证据表明其中一些同源蛋白具有功能,但它们的作用机制在很大程度上仍不清楚。在这里,我们首次对来自嗜热泉古菌 Sulfolobus solfataricus 的同源重组蛋白 SsoRal3 进行了生化表征。SsoRal3 蛋白是一种 ssDNA 依赖性 ATP 酶,可在饱和和亚饱和浓度下催化链入侵。它可以结合 ssDNA 和 dsDNA,但它的结合偏好会因 ATP 的存在或缺失而改变。添加 SsoRal3 到 SsoRadA 核蛋白丝可以降低总 ATP 酶活性。亚饱和浓度的 SsoRal3 将 SsoRadA 的 ssDNA 结合活性增加约 9 倍,还增加了 SsoRadA 催化的链入侵产物的持久性。总的来说,这些结果表明 SsoRal3 可以稳定 SsoRadA 预链丝。