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LY303511 和 TRAIL 诱导凋亡的计算模型表明 cFLIP 的动态调节。

Computational modelling of LY303511 and TRAIL-induced apoptosis suggests dynamic regulation of cFLIP.

机构信息

Singapore-MIT Alliance, E4-04-10, 4 Engineering Drive 3, Singapore.

出版信息

Bioinformatics. 2013 Feb 1;29(3):347-54. doi: 10.1093/bioinformatics/bts702. Epub 2012 Dec 13.

Abstract

MOTIVATION

TRAIL has been widely studied for the ability to kill cancer cells selectively, but its clinical usefulness has been hindered by the development of resistance. Multiple compounds have been identified that sensitize cancer cells to TRAIL-induced apoptosis. The drug LY303511 (LY30), combined with TRAIL, caused synergistic (greater than additive) killing of multiple cancer cell lines. We used mathematical modelling and ordinary differential equations to represent how LY30 and TRAIL individually affect HeLa cells, and to predict how the combined treatment achieves synergy.

RESULTS

Model-based predictions were compared with in vitro experiments. The combination treatment model was successful at mimicking the synergistic levels of cell death caused by LY30 and TRAIL combined. However, there were significant failures of the model to mimic upstream activation at early time points, particularly the slope of caspase-8 activation. This flaw in the model led us to perform additional measurements of early caspase-8 activation. Surprisingly, caspase-8 exhibited a transient decrease in activity after LY30 treatment, prior to strong activation. cFLIP, an inhibitor of caspase-8 activation, was up-regulated briefly after 30 min of LY30 treatment, followed by a significant down-regulation over prolonged exposure. A further model suggested that LY30-induced fluctuation of cFLIP might result from tilting the ratio of two key species of reactive oxygen species (ROS), superoxide and hydrogen peroxide. Computational modelling extracted novel biological implications from measured dynamics, identified time intervals with unexplained effects, and clarified the non-monotonic effects of the drug LY30 on cFLIP during cancer cell apoptosis.

摘要

动机

TRAIL 因其能够选择性杀伤癌细胞而被广泛研究,但由于耐药性的发展,其临床应用受到了阻碍。已经确定了多种化合物可以使癌细胞对 TRAIL 诱导的细胞凋亡敏感。药物 LY303511(LY30)与 TRAIL 联合使用可引起多种癌细胞系的协同(大于相加)杀伤。我们使用数学建模和常微分方程来表示 LY30 和 TRAIL 单独作用于 HeLa 细胞的方式,并预测联合治疗如何实现协同作用。

结果

基于模型的预测与体外实验进行了比较。联合治疗模型成功地模拟了 LY30 和 TRAIL 联合使用引起的协同水平的细胞死亡。然而,模型在早期时间点(尤其是 caspase-8 激活的斜率)上对上游激活的模拟存在显著失败。该模型的缺陷促使我们进行了早期 caspase-8 激活的额外测量。令人惊讶的是,caspase-8 在 LY30 处理后表现出短暂的活性下降,然后才强烈激活。caspase-8 的抑制剂 cFLIP 在 LY30 处理 30 分钟后短暂上调,随后在长时间暴露时显著下调。进一步的模型表明,LY30 诱导的 cFLIP 波动可能是由于两种关键活性氧(ROS)物种(超氧阴离子和过氧化氢)的比例发生倾斜所致。计算建模从测量的动力学中提取出了新的生物学含义,确定了具有未解释效果的时间间隔,并阐明了药物 LY30 在癌细胞凋亡过程中对 cFLIP 的非单调效应。

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