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对比北大西洋不同省份颗粒相关细菌的胞外酶活性。

Contrasting extracellular enzyme activities of particle-associated bacteria from distinct provinces of the North Atlantic Ocean.

机构信息

Department of Marine Sciences, University of North Carolina at Chapel Hill Chapel Hill, NC, USA.

出版信息

Front Microbiol. 2012 Dec 13;3:425. doi: 10.3389/fmicb.2012.00425. eCollection 2012.

Abstract

Microbial communities play a key role in the marine carbon cycle, processing much of phytoplankton-derived organic matter. The composition of these communities varies by depth, season, and location in the ocean; the functional consequences of these compositional variations for the carbon cycle are only beginning to be explored. We measured the abilities of microbial communities in the large-particle fraction (retained by a 10-μm pore-size cartridge filter) to enzymatically hydrolyze high molecular weight substrates, and therefore initiate carbon remineralization in four distinct oceanic provinces: the boreal polar (BPLR), the Arctic oceanic (ARCT), the North Atlantic drift (NADR), and the North Atlantic subtropical (NAST) provinces. Since we expected the large-particle fraction to include phytoplankton cells, we measured the hydrolysis of polysaccharide substrates (laminarin, fucoidan, xylan, and chondroitin sulfate) expected to be associated with phytoplankton. Hydrolysis rates and patterns clustered into two groups, the BPLR/ARCT and the NADR/NAST. All four substrates were hydrolyzed by the BPLR/ARCT communities; hydrolysis rates of individual substrate varied by factors of ca. 1-4. In contrast, chondroitin was not hydrolyzed in the NADR/NAST, and hydrolytic activity was dominated by laminarinase. Fluorescence in situ hybridization of the large-particle fraction post-incubation showed a substantial contribution (15-26%) of CF319a-positive cells (Bacteroidetes) to total DAPI-stainable cells. Concurrent studies of microbial community composition and of fosmids from these same stations also demonstrated similarities between BPLR and ARCT stations, which were distinct from the NADR/NAST stations. Together, these data support a picture of compositionally as well as functionally distinct communities across these oceanic provinces.

摘要

微生物群落在海洋碳循环中起着关键作用,它们处理了大部分浮游植物衍生的有机物质。这些群落的组成随深度、季节和海洋位置的变化而变化;这些组成变化对碳循环的功能影响才刚刚开始被探索。我们测量了微生物群落在大颗粒部分(通过 10 微米孔径的滤膜保留)中酶解高分子底物的能力,从而启动了四个不同海洋区域的碳再矿化过程:北极北部陆架区(BPLR)、北极海洋区(ARCT)、北大西洋漂流区(NADR)和北大西洋亚热带区(NAST)。由于我们预计大颗粒部分会包含浮游植物细胞,因此我们测量了与浮游植物相关的多糖底物(海藻糖、褐藻糖胶、木聚糖和硫酸软骨素)的水解。水解速率和模式聚类为两组,BPLR/ARCT 和 NADR/NAST。所有四种底物都被 BPLR/ARCT 群落水解;个别底物的水解速率相差约 1-4 倍。相比之下,NADR/NAST 中不水解软骨素,并且水解活性主要由海藻糖酶主导。孵育后大颗粒部分的荧光原位杂交显示 CF319a 阳性细胞(拟杆菌门)对总 DAPI 可染细胞的贡献相当大(15-26%)。对这些相同站位的微生物群落组成和 fosmid 的同步研究也表明,BPLR 和 ARCT 站位的群落组成和功能相似,与 NADR/NAST 站位明显不同。这些数据共同支持了这些海洋区域的群落在组成和功能上都具有明显差异的观点。

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