Department of Chemistry, The City College of New York, New York, NY 10031, USA.
Nucleic Acids Res. 2013 Feb 1;41(4):2552-64. doi: 10.1093/nar/gks1334. Epub 2012 Dec 28.
Synthetic RNA formulations and viral vectors are the two main approaches for delivering small therapeutic RNA to human cells. Here we report findings supporting an alternative strategy in which an endogenous human RNA polymerase (RNAP) is harnessed to make RNA hairpin-containing small RNA from synthetic single-stranded DNA oligonucleotides. We report that circularizing a DNA template strand encoding a pre-microRNA hairpin mimic can trigger its circumtranscription by human RNAP III in vitro and in human cells. Sequence and secondary structure preferences that appear to promote productive transcription are described. The circular topology of the template is required for productive transcription, at least in part, to stabilize the template against exonucleases. In contrast to bacteriophage and Escherichia coli RNAPs, human RNAPs do not carry out rolling circle transcription on circularized templates. While transfected DNA circles distribute between the nucleus and cytosol, their transcripts are found mainly in the cytosol. Circularized oligonucleotides are synthetic, free of the hazards of viral vectors and maintain small RNA information in a stable form that RNAP III can access in a cellular context with, in some cases, near promoter-like precision and biologically relevant efficiency.
合成 RNA 制剂和病毒载体是将小治疗性 RNA 递送至人类细胞的两种主要方法。在这里,我们报告了支持替代策略的发现,该策略利用内源性人类 RNA 聚合酶(RNAP)从合成的单链 DNA 寡核苷酸制备含有 RNA 发夹的小 RNA。我们报告说,环状化编码 miRNA 发夹模拟物的 DNA 模板链可以在体外和人类细胞中触发其由人类 RNAP III 进行的反转录。描述了似乎促进有效转录的序列和二级结构偏好。模板的环状拓扑结构对于有效转录是必需的,至少部分原因是其可以稳定模板免受核酸外切酶的作用。与噬菌体和大肠杆菌 RNA 聚合酶不同,人类 RNA 聚合酶不会在环状模板上进行滚环转录。虽然转染的 DNA 环在核和细胞质之间分布,但它们的转录物主要在细胞质中发现。环状寡核苷酸是合成的,没有病毒载体的危险,并且以 RNAP III 可以在具有接近启动子样精度和生物学相关效率的细胞环境中访问的稳定形式维持小 RNA 信息。