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蛋白质构象运动和静电锚固位点对水合作用动力学和氢键性质的重要性。

Importance of protein conformational motions and electrostatic anchoring sites on the dynamics and hydrogen bond properties of hydration water.

机构信息

Molecular Modeling Laboratory, Department of Chemistry, Indian Institute of Technology, Kharagpur-721302, India.

出版信息

Langmuir. 2013 Jan 29;29(4):1162-73. doi: 10.1021/la303959m. Epub 2013 Jan 15.

DOI:10.1021/la303959m
PMID:23289748
Abstract

The microscopic dynamic properties of water molecules present in the vicinity of a protein are expected to be sensitive to its local conformational motions and the presence of polar and charged groups at the surface capable of anchoring water molecules through hydrogen bonds. In this work, we attempt to understand such sensitivity by performing detailed molecular dynamics simulations of the globular protein barstar solvated in aqueous medium. Our calculations demonstrate that enhanced confinement at the protein surface on freezing its local motions leads to increasingly restricted water mobility with long residence times around the secondary structures. It is found that the inability of the surface water molecules to bind with the protein residues by hydrogen bonds in the absence of protein-water (PW) electrostatic interactions is compensated by enhanced water-water hydrogen bonds around the protein with uniform bulklike behaviors. Importantly, it is further noticed that in contrast to the PW hydrogen bond relaxation time scale, the kinetics of the breaking and formation of such bonds are not affected on freezing the protein's conformational motions.

摘要

水是生命之源,我们每天都需要摄入足够的水分来维持身体的正常运转。然而,你知道吗?水对于生命的意义远不止于此。水是地球上最常见的物质之一,也是所有生命形式的重要组成部分。从细胞到整个生态系统,水都在发挥着至关重要的作用。它不仅是化学反应的媒介,也是维持生命的必需品。没有水,生命将无法存在。

我们的身体大约 60%是由水组成的,这使得水成为了我们身体中最重要的物质之一。水在我们的身体中扮演着多种角色,如运输营养物质、代谢废物、调节体温等。此外,水还能帮助我们保持皮肤的健康和弹性。

除了在人体中的重要性,水在生态系统中也扮演着至关重要的角色。水是许多生物的栖息地,包括鱼类、鸟类和植物等。水还是光合作用的重要组成部分,植物通过吸收水分和二氧化碳来产生氧气和有机物质。此外,水还能帮助调节气候,通过蒸发和降水来影响大气中的温度和湿度。

然而,随着人口的增长和经济的发展,我们对水资源的需求也在不断增加。这导致了水资源的短缺和水污染等问题。为了解决这些问题,我们需要采取措施来保护和管理水资源。这包括节约用水、减少水污染和推广可持续水资源管理等。

总之,水是我们生命中不可或缺的一部分。我们需要珍惜水资源,保护它们,以确保我们和我们的后代都能享受到水带来的好处。

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