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土耳其常见非本地淡水鱼类的DNA条形码分析:低遗传多样性但高种群结构

DNA barcoding common non-native freshwater fish species in Turkey: low genetic diversity but high population structuring.

作者信息

Keskin Emre, Ağdamar Sevan, Tarkan Ali Serhan

机构信息

Department of Fisheries and Aquaculture, Agricultural Faculty, Ankara University, Ankara, Turkey.

出版信息

Mitochondrial DNA. 2013 Jun;24(3):276-87. doi: 10.3109/19401736.2012.748041. Epub 2013 Jan 9.

Abstract

Negative impacts of introduced non-native freshwater species on native species have been increasingly recognized in the world as well as in Turkey. However, there has been relatively little attention on genetic characterization of alien freshwater fishes in their non-native distribution range and virtually no study has been conducted in Turkey despite its crucial importance in invasion biology. The purpose of this study was to elucidate genetic diversity of common non-native freshwater fish species (Carassius auratus, Carassius gibelio, Gambusia holbrooki, Lepomis gibbosus, and Pseudorasbora parva) using mitochondrial Cytochrome c oxidase subunit I (COI) sequences; known as DNA barcodes. Through the whole dataset, seventeen haplotypes (haplotype diversity = 0.8908) were found containing 145 COI sequences. Mean Kimura two-parameter genetic distances were calculated as 0.209 for interspecific distance and 0.009 for intraspecific variation. COI barcode diversity among populations of the same species was found to be low, especially for C. gibelio, G. holbrooki, and L. gibbosus populations which were 0.5%, 0.6%, and 0.3%, respectively. Our results clearly demonstrate the effectiveness of the DNA barcoding approach both for identifications at species level and revealing intraspecific variation among populations, which could be used for effective management measures for invasive species and conservation strategies for indigenous and endemic species.

摘要

外来非本地淡水物种对本地物种的负面影响在世界范围内以及土耳其都日益受到认可。然而,对于外来淡水鱼类在其非本地分布范围内的遗传特征研究相对较少,尽管其在入侵生物学中至关重要,但在土耳其几乎没有相关研究。本研究的目的是利用线粒体细胞色素c氧化酶亚基I(COI)序列(即所谓的DNA条形码)来阐明常见非本地淡水鱼类物种(金鱼、银鲫、食蚊鱼、驼背太阳鱼和麦穗鱼)的遗传多样性。在整个数据集中,共发现17个单倍型(单倍型多样性=0.8908),包含145条COI序列。种间平均Kimura双参数遗传距离计算为0.209,种内变异为0.009。发现同一物种不同种群间的COI条形码多样性较低,特别是银鲫、食蚊鱼和驼背太阳鱼种群,分别为0.5%、0.6%和0.3%。我们的结果清楚地证明了DNA条形码方法在物种水平鉴定以及揭示种群内种内变异方面的有效性,可用于制定入侵物种的有效管理措施以及本地和特有物种的保护策略。

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