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几何形态测量性状组合作为系统发育数据:从腹足纲贝壳中提取系统发育信号。

Geometric morphometric character suites as phylogenetic data: extracting phylogenetic signal from gastropod shells.

机构信息

Department of Earth and Atmospheric Sciences, Cornell University, Ithaca, NY 14853, USA.

出版信息

Syst Biol. 2013 May 1;62(3):366-85. doi: 10.1093/sysbio/syt002. Epub 2013 Jan 16.

Abstract

Despite being the objects of numerous macroevolutionary studies, many of the best represented constituents of the fossil record-including diverse examples such as foraminifera, brachiopods, and mollusks-have mineralized skeletons with limited discrete characteristics, making morphological phylogenies difficult to construct. In contrast to their paucity of phylogenetic characters, the mineralized structures (tests and shells) of these fossil groups frequently have distinctive shapes that have long proved useful for their classification. The recent introduction of methodologies for including continuous data directly in a phylogenetic analysis has increased the number of available characters, making it possible to produce phylogenies based, in whole or part, on continuous character data collected from such taxa. Geometric morphometric methods provide tools for accurately characterizing shape variation and can produce quantitative data that can therefore now be included in a phylogenetic matrix in a nonarbitrary manner. Here, the marine gastropod genus Conus is used to evaluate the ability of continuous characters-generated from a geometric morphometric analysis of shell shape-to contribute to a total evidence phylogenetic hypothesis constructed using molecular and morphological data. Furthermore, the ability of continuous characters derived from geometric morphometric analyses to place fossil taxa with limited discrete characters into a phylogeny with their extant relatives was tested by simulating the inclusion of fossil taxa. This was done by removing the molecular partition of individual extant species to produce a "cladistic pseudofossil" with only the geometric morphometric derived characters coded. The phylogenetic position of each cladistic pseudofossil taxon was then compared with its placement in the total evidence tree and a symmetric resampling tree to evaluate the degree to which morphometric characters alone can correctly place simulated fossil species. In 33-45% of the test cases (depending upon the approach used for measuring success), it was possible to place the pseudofossil taxon into the correct regions of the phylogeny using only the morphometric characters. This suggests that the incorporation of extinct Conus taxa into phylogenetic hypotheses will be possible, permitting a wide range of macroevolutionary questions to be addressed within this genus. This methodology also has potential to contribute to phylogenetic reconstructions for other major components of the fossil record that lack numerous discrete characters.

摘要

尽管已经有许多关于宏观进化的研究,但许多化石记录中最好的代表,包括有孔虫、腕足动物和软体动物等多种多样的例子,它们的骨骼都已经矿化,具有有限的离散特征,这使得形态系统发育难以构建。与它们缺乏系统发育特征形成对比的是,这些化石群的矿化结构(壳和壳)通常具有独特的形状,这些形状长期以来一直对它们的分类很有用。最近引入了将连续数据直接纳入系统发育分析的方法,增加了可用特征的数量,使得可以基于来自这些类群的连续特征数据的全部或部分来生成系统发育。几何形态测量方法为准确描述形状变化提供了工具,并且可以产生定量数据,因此现在可以以非任意的方式将其包含在系统发育矩阵中。在这里,使用海洋腹足纲蜗牛属 Conus 来评估从壳形状的几何形态测量分析中生成的连续特征对使用分子和形态数据构建的总证据系统发育假说的贡献。此外,通过模拟包含化石类群,测试了从几何形态测量分析中得出的连续特征将具有有限离散特征的化石类群置于与现存亲属的系统发育中的能力。这是通过删除单个现存物种的分子分区来完成的,只对几何形态测量衍生特征进行编码,生成“分类假化石”。然后,将每个分类假化石分类单元的系统发育位置与总证据树和对称重采样树进行比较,以评估仅形态特征单独放置模拟化石物种的程度。在 33-45%的测试案例中(取决于用于测量成功的方法),仅使用形态特征就可以将拟化石分类单元放置在系统发育树的正确区域中。这表明,将灭绝的 Conus 类群纳入系统发育假设将是可能的,这使得可以在该属中解决广泛的宏观进化问题。该方法也有可能为其他缺乏大量离散特征的化石记录的主要组成部分的系统发育重建做出贡献。

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