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改变磷脂酶 C 的预测动力学是否会改变其活性和膜结合?

Does changing the predicted dynamics of a phospholipase C alter activity and membrane binding?

机构信息

Department of Chemistry, Boston College, Chestnut Hill, Massachusetts, USA.

出版信息

Biophys J. 2013 Jan 8;104(1):185-95. doi: 10.1016/j.bpj.2012.11.015.

Abstract

The enzymatic activity of secreted phosphatidylinositol-specific phospholipase C (PI-PLC) enzymes is associated with bacterial virulence. Although the PI-PLC active site has no obvious lid, molecular-dynamics simulations suggest that correlated loop motions may limit access to the active site, and two Pro residues, Pro(245) and Pro(254), are associated with these correlated motions. Whereas the region containing both Pro residues is quite variable among PI-PLCs, it shows high conservation in virulence-associated, secreted PI-PLCs that bind to the surface of cells. These regions of the protein are also associated with phosphatidylcholine binding, which enhances PI-PLC activity. In silico mutagenesis of Pro(245) disrupts correlated motions between the two halves of Bacillus thuringiensis PI-PLC, and Pro(245) variants show significantly reduced enzymatic activity in all assay systems. PC still enhanced activity, but not to the level of wild-type enzyme. Mutagenesis of Pro(254) appears to stiffen the PI-PLC structure, but experimental mutations had minor effects on activity and membrane binding. With the exception of P245Y, reduced activity was not associated with reduced membrane affinity. This combination of simulations and experiments suggests that correlated motions between the two halves of PI-PLC may be more important for enzymatic activity than for vesicle binding.

摘要

分泌型磷脂酰肌醇特异性磷脂酶 C(PI-PLC)酶的酶活性与细菌的毒力有关。尽管 PI-PLC 的活性位点没有明显的盖子,但分子动力学模拟表明,相关的环运动可能限制了对活性位点的访问,并且两个脯氨酸残基 Pro(245)和 Pro(254)与这些相关运动有关。虽然包含这两个脯氨酸残基的区域在不同的 PI-PLC 之间变化很大,但它在与细胞表面结合的与毒力相关的分泌型 PI-PLC 中高度保守。该蛋白的这些区域也与磷脂酰胆碱的结合有关,这增强了 PI-PLC 的活性。在枯草芽孢杆菌 PI-PLC 中 Pro(245)的计算机诱变破坏了两半之间的相关运动,并且 Pro(245)变体在所有测定系统中的酶活性均显著降低。PC 仍然增强了活性,但不能达到野生型酶的水平。Pro(254)的突变似乎使 PI-PLC 结构变硬,但实验突变对活性和膜结合的影响较小。除了 P245Y 之外,活性降低与膜亲和力降低无关。模拟和实验的这种组合表明,PI-PLC 两半之间的相关运动对于酶活性可能比囊泡结合更为重要。

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