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高通量虚拟筛选间苯三酚衍生物对 HIV-逆转录酶的抑制作用。

High-throughput virtual screening of phloroglucinol derivatives against HIV-reverse transcriptase.

机构信息

Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research, Sect-67, SAS Nagar, 160062 Punjab, India.

出版信息

Mol Divers. 2013 Feb;17(1):97-110. doi: 10.1007/s11030-012-9417-7. Epub 2013 Jan 22.

DOI:10.1007/s11030-012-9417-7
PMID:23338523
Abstract

Therapeutic agents exert their pharmacological and adverse effects by interacting with molecular targets. Even if drug molecules are intended to interact with specific targets in a desirable manner, they are often found to bind to other targets. Nowadays, research is focused on a single molecule that simultaneously targets multiple disease-causing proteins. Therefore, off-target identification of existing chemical space can be a valuable tool to find safe and effective multi-targeted therapeutic agents at a significantly lower cost to patients. Phloroglucinols represent a class of compounds, which exhibits a diverse range of biological activities, such as anti-HIV, antimalarial, antileishmanial, antituberculosis, antibacterial, and antifungal. The aim of the current study is to explore untapped potential of various series of phloroglucinols against HIV reverse transcriptase (HIV-RTase). A series of filtering parameters was applied in search of viable phloroglucinol derivatives against HIV-RTase. A library of phloroglucinol derivatives was screened based on their toxicity potential followed by predicted ADME parameters. The filtered compounds were then carried forward for docking analysis against HIV-RTase. A set of 37 phloroglucinol compounds with diverse pharmacological profile was found to have good binding affinity towards HIV-RTase. These molecules formed hydrogen bonds with Lys101, Lys103, Val106, and Leu234 residues and π–π stacking interaction with Tyr318 residue of the protein. Here, we propose potential phloroglucinol derivatives with different known biological activity that can be repurposed as potential hits against HIV.

摘要

治疗剂通过与分子靶标相互作用发挥其药理和不良作用。即使药物分子旨在以期望的方式与特定靶标相互作用,它们也经常被发现与其他靶标结合。如今,研究的重点是一种同时针对多种致病蛋白的单一分子。因此,对现有化学空间的脱靶识别可以成为一种有价值的工具,可在显著降低患者成本的情况下找到安全有效的多靶治疗剂。苯并呋喃醇代表了一类化合物,具有广泛的生物活性,如抗 HIV、抗疟原虫、抗利什曼原虫、抗结核、抗菌和抗真菌。本研究旨在探索各种苯并呋喃醇系列化合物对 HIV 逆转录酶 (HIV-RTase) 的未开发潜力。应用了一系列过滤参数来寻找针对 HIV-RTase 的可行苯并呋喃醇衍生物。根据毒性潜力对苯并呋喃醇衍生物库进行了筛选,然后根据预测的 ADME 参数对其进行了筛选。然后将筛选出的化合物进一步用于针对 HIV-RTase 的对接分析。发现一组具有不同药理特性的 37 种苯并呋喃醇化合物对 HIV-RTase 具有良好的结合亲和力。这些分子与 Lys101、Lys103、Val106 和 Leu234 残基形成氢键,并与蛋白质的 Tyr318 残基形成 π-π 堆积相互作用。在这里,我们提出了具有不同已知生物学活性的潜在苯并呋喃醇衍生物,可重新用作针对 HIV 的潜在命中。

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