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珠海弧菌,新种,从日本对虾(日本囊对虾)中分离得到。

Vibrio zhuhaiensis sp. nov., isolated from a Japanese prawn (Marsupenaeus japonicus).

机构信息

College of Chemical Engineering, Huaqiao University, Xiamen, 361021, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2013 May;103(5):989-96. doi: 10.1007/s10482-013-9878-4. Epub 2013 Jan 22.

Abstract

A Gram-negative, oxidase-positive, facultatively anaerobic bacterium, designated strain E20121, was isolated from the digestive tract of a Japanese prawn (Marsupenaeus japonicus) collected from the coastal sea water area of Zhuhai, Guangdong province, China. The new isolate was determined to be closely related to Vibrio ponticus DSM 16217(T), having 97.6 % 16S rRNA gene sequence similarity. Phylogenetic analysis based on recA, pyrH and rpoA also showed low levels of sequence similarities (72.6-96.6 %) with all species of the genus Vibrio. A multigene phylogenetic tree using concatenated sequences of the four genes (16S rRNA, rpoA, recA and pyrH) clearly showed that the new isolate is different from the currently known Vibrio species. DNA-DNA hybridization experiments revealed similarity values below 70 % with the closest related species V. ponticus DSM 16217(T). Several phenotypic traits enabled the differentiation of strain E20121 from the closest phylogenetic neighbours. The DNA G+C content of strain E20121 was determined to be 47.6 mol % and the major fatty acid components identified were C16:1ω7c and/or C16:1ω6c (39.8 %), C18:1ω7c (13.6 %) and C16:0 (9.6 %). Based on genotypic, phenotypic, chemotaxonomic, phylogenetic and DNA-DNA hybridization analyses, strain E20121 is proposed to represent a novel species of the genus Vibrio for which the name Vibrio zhuhaiensis sp. nov. is proposed. The type strain is E20121(T)(=DSM 25602(T) = CCTCC AB 2011174(T)).

摘要

一株革兰氏阴性、氧化酶阳性、兼性厌氧细菌,被命名为 E20121 菌株,从中国广东省珠海市沿海海域采集的日本对虾消化道中分离得到。新分离株与 Vibrio ponticus DSM 16217(T)密切相关,16S rRNA 基因序列相似度为 97.6%。基于 recA、pyrH 和 rpoA 的系统发育分析也显示与所有属 Vibrio 种的序列相似度较低(72.6-96.6%)。使用四个基因(16S rRNA、rpoA、recA 和 pyrH)的串联序列构建的多基因系统发育树清楚地表明,新分离株与目前已知的 Vibrio 种不同。DNA-DNA 杂交实验显示与最接近的相关种 V. ponticus DSM 16217(T)的相似性值低于 70%。一些表型特征使菌株 E20121 能够与最接近的系统发育近缘种区分开来。E20121 株的 DNA G+C 含量为 47.6 mol%,鉴定的主要脂肪酸成分是 C16:1ω7c 和/或 C16:1ω6c(39.8%)、C18:1ω7c(13.6%)和 C16:0(9.6%)。基于基因型、表型、化学分类、系统发育和 DNA-DNA 杂交分析,菌株 E20121 代表 Vibrio 属的一个新种,建议命名为 Vibrio zhuhaiensis sp. nov.。模式菌株为 E20121(T)(=DSM 25602(T)=CCTCC AB 2011174(T))。

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