Rabinovich A L, Ripatti P O, Balabaev N K
Institute of Biology, Karelian Scientific Center, Russian Academy of Sciences, Pushkinskaja 11, Petrozavodsk, 185610 Russia.
J Biol Phys. 1999 Jun;25(2-3):245-62. doi: 10.1023/A:1005180027451.
Molecular dynamics simulations of three model lipid monolayers of 2,3-diacyl-D-glycerolipids, that contained stearoyl (18:0) in the position 3 and oleoyl (18:ω9cis), linoleoyl (18:2ω6cis), or linolenoyl (18:3ω3cis) in the position 2, have been carried out. The simulation systems consisted of 24 lipid molecules arranged in a rectangular simulation cell, with periodic boundary conditions in the surface plane. 1 nanosecond simulations were performed at T = 295 K. C-C and C-H bond order parameter profiles and the bond orientation distributions about the monolayer normal have been calculated. The relation of the distributions to the order parameters was analyzed in terms of maxima and widths of the distributions. The cis double bond order parameter is found to be higher than those of adjacent single C-C bonds. The widths of the two distributions of C-H bonds of the cis double bond segment in di- and triunsaturated molecules are much smaller than that obtained for methylene group located between the double bonds. The bond orientation distribution function widths depend on both the segment location in the chain and the segment chemical structure.
对三种2,3-二酰基-D-甘油脂质模型脂质单分子层进行了分子动力学模拟,这些单分子层在3位含有硬脂酰基(18:0),在2位含有油酰基(18:ω9顺式)、亚油酰基(18:2ω6顺式)或亚麻酸酰基(18:3ω3顺式)。模拟系统由24个脂质分子组成,排列在一个矩形模拟盒中,在表面平面上采用周期性边界条件。在T = 295 K下进行了1纳秒的模拟。计算了C-C和C-H键序参数分布以及围绕单分子层法线的键取向分布。根据分布的最大值和宽度分析了分布与序参数的关系。发现顺式双键序参数高于相邻单C-C键的序参数。二不饱和和三不饱和分子中顺式双键段的C-H键的两种分布宽度比双键之间的亚甲基的分布宽度小得多。键取向分布函数宽度取决于链中的片段位置和片段化学结构。