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大象碳氧肌红蛋白和氧合肌红蛋白中E7组氨酸向谷氨酰胺的取代伴随远端口袋的重排:血红素口袋中一个新芳香族残基的1H NMR鉴定

Rearrangement of the distal pocket accompanying E7 His----Gln substitution in elephant carbonmonoxy- and oxymyoglobin: 1H NMR identification of a new aromatic residue in the heme pocket.

作者信息

Yu L P, La Mar G N, Mizukami H

机构信息

Department of Chemistry, University of California, Davis 95616.

出版信息

Biochemistry. 1990 Mar 13;29(10):2578-85. doi: 10.1021/bi00462a021.

DOI:10.1021/bi00462a021
PMID:2334682
Abstract

Two-dimensional 1H NMR methods have been used to assign side-chain resonances for the residues in the distal heme pocket of elephant carbonmonoxymyoglobin (MbCO) and oxymyoglobin (MbO2). It is shown that, while the other residues in the heme pocket are minimally perturbed, the Phe CD4 residue in elephant MbCO and MbO2 resonates considerably upfield compared to the corresponding residue in sperm whale MbCO. The new NOE connectivities to Val E11 and heme-induced ring current calculations indicate that Phe CD4 has been inserted into the distal heme pocket by reorienting the aromatic side chain and moving the CD corner closer to the heme. The C zeta H proton of the Phe CD4 was found to move toward the iron of the heme by approximately 4 A relative to the position of sperm whale MbCO, requiring minimally a 3-A movement of the CD helical backbone. The significantly altered distal conformation in elephant myoglobin, rather than the single distal E7 substitution, forms a plausible basis for its altered functional properties of lower autoxidation rate, higher redox potential, and increased affinity for CO ligand. These results demonstrate that one-to-one interpretation of amino acid residue substitution (E7 His----Gln) is oversimplified and that conformational changes of substituted proteins which are not readily predicted have to be considered for interpretation of their functional properties.

摘要

二维¹H NMR方法已被用于确定非洲象一氧化碳肌红蛋白(MbCO)和氧合肌红蛋白(MbO₂)远侧血红素口袋中残基的侧链共振。结果表明,虽然血红素口袋中的其他残基受到的扰动最小,但与抹香鲸MbCO中的相应残基相比,非洲象MbCO和MbO₂中的苯丙氨酸CD4残基共振明显向高场移动。与缬氨酸E11的新的核Overhauser效应(NOE)连接以及血红素诱导的环流计算表明,苯丙氨酸CD4通过重新定向芳香侧链并使CD转角更靠近血红素而插入到远侧血红素口袋中。相对于抹香鲸MbCO的位置,发现苯丙氨酸CD4的CζH质子向血红素的铁移动了约4 Å,这至少需要CD螺旋主链移动3 Å。非洲象肌红蛋白中明显改变的远侧构象,而非单个远侧E7取代,为其较低的自氧化速率、较高的氧化还原电位和对CO配体增加的亲和力等改变的功能特性形成了一个合理的基础。这些结果表明,对氨基酸残基取代(E7组氨酸→谷氨酰胺)进行一对一的解释过于简单化,并且在解释取代蛋白的功能特性时必须考虑不易预测到的取代蛋白的构象变化。

相似文献

1
Rearrangement of the distal pocket accompanying E7 His----Gln substitution in elephant carbonmonoxy- and oxymyoglobin: 1H NMR identification of a new aromatic residue in the heme pocket.大象碳氧肌红蛋白和氧合肌红蛋白中E7组氨酸向谷氨酰胺的取代伴随远端口袋的重排:血红素口袋中一个新芳香族残基的1H NMR鉴定
Biochemistry. 1990 Mar 13;29(10):2578-85. doi: 10.1021/bi00462a021.
2
1H NMR investigation of the heme cavity of elephant (E7 Gln) met-cyano-myoglobin. Evidence for a B-helix phenylalanine interaction with bound ligand.大象(E7谷氨酰胺)高铁氰化肌红蛋白血红素腔的1H核磁共振研究。β-螺旋苯丙氨酸与结合配体相互作用的证据。
J Biol Chem. 1993 Jul 15;268(20):14826-35.
3
A 1H NMR comparison of the met-cyano complexes of elephant and sperm whale myoglobin. Assignment of labile proton resonances in the heme cavity and determination of the distal glutamine orientation from relaxation data.大象和抹香鲸肌红蛋白的甲硫氨酸 - 氰基配合物的¹H NMR比较。血红素腔内不稳定质子共振的归属以及根据弛豫数据确定远端谷氨酰胺的取向。
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Solution structure determination of the heme cavity in the E7 His-->Val cyano-met myoglobin point mutant based on the 1H NMR detected dipolar field of the iron: evidence for contraction of the heme pocket.基于铁的1H NMR检测偶极场对E7组氨酸突变为缬氨酸的氰化高铁肌红蛋白点突变体中血红素腔的溶液结构测定:血红素口袋收缩的证据
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Assignment of heme and distal amino acid resonances in the 1H-NMR spectra of the carbon monoxide and oxygen complexes of sperm whale myoglobin.抹香鲸肌红蛋白一氧化碳和氧气复合物的1H-NMR谱中血红素和远端氨基酸共振的归属
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Imidazole is a sensitive probe of steric hindrance in the distal pockets of oxygen-binding heme proteins.咪唑是氧结合血红素蛋白远端口袋中空间位阻的灵敏探针。
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Resonance Raman studies of CO and O2 binding to elephant myoglobin (distal His(E7)----Gln).一氧化碳和氧气与大象肌红蛋白(远端组氨酸(E7)----谷氨酰胺)结合的共振拉曼研究。
J Biol Chem. 1985 Jul 15;260(14):8360-5.
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The effects of amino acid substitution at position E7 (residue 64) on the kinetics of ligand binding to sperm whale myoglobin.E7位(第64位残基)氨基酸取代对配体与抹香鲸肌红蛋白结合动力学的影响。
J Biol Chem. 1990 Feb 25;265(6):3168-76.
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African elephant myoglobin with an unusual autoxidation behavior: comparison with the H64Q mutant of sperm whale myoglobin.具有异常自氧化行为的非洲象肌红蛋白:与抹香鲸肌红蛋白H64Q突变体的比较。
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引用本文的文献

1
Structure-dynamics-function relationships in Asian elephant (Elephas maximus) myoglobin. An optical spectroscopy and flash photolysis study on functionally important motions.亚洲象(Elephas maximus)肌红蛋白的结构-动力学-功能关系。关于功能重要运动的光谱学和闪光光解研究。
Biophys J. 1993 Dec;65(6):2461-72. doi: 10.1016/S0006-3495(93)81311-0.
2
Abalone myoglobins evolved from indoleamine dioxygenase: the cDNA-derived amino acid sequence of myoglobin from Nordotis madaka.鲍鱼肌红蛋白由吲哚胺双加氧酶进化而来:日本花鲍肌红蛋白的cDNA推导氨基酸序列。
J Protein Chem. 1994 Jan;13(1):9-13. doi: 10.1007/BF01891987.
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The amino acid sequence of hemoglobin II from the symbiont-harboring clam Lucina pectinata.
来自共生蛤类栉孔扇贝血红蛋白II的氨基酸序列。
J Protein Chem. 1991 Dec;10(6):609-22. doi: 10.1007/BF01025713.