Yu L P, La Mar G N, Mizukami H
Department of Chemistry, University of California, Davis 95616.
Biochemistry. 1990 Mar 13;29(10):2578-85. doi: 10.1021/bi00462a021.
Two-dimensional 1H NMR methods have been used to assign side-chain resonances for the residues in the distal heme pocket of elephant carbonmonoxymyoglobin (MbCO) and oxymyoglobin (MbO2). It is shown that, while the other residues in the heme pocket are minimally perturbed, the Phe CD4 residue in elephant MbCO and MbO2 resonates considerably upfield compared to the corresponding residue in sperm whale MbCO. The new NOE connectivities to Val E11 and heme-induced ring current calculations indicate that Phe CD4 has been inserted into the distal heme pocket by reorienting the aromatic side chain and moving the CD corner closer to the heme. The C zeta H proton of the Phe CD4 was found to move toward the iron of the heme by approximately 4 A relative to the position of sperm whale MbCO, requiring minimally a 3-A movement of the CD helical backbone. The significantly altered distal conformation in elephant myoglobin, rather than the single distal E7 substitution, forms a plausible basis for its altered functional properties of lower autoxidation rate, higher redox potential, and increased affinity for CO ligand. These results demonstrate that one-to-one interpretation of amino acid residue substitution (E7 His----Gln) is oversimplified and that conformational changes of substituted proteins which are not readily predicted have to be considered for interpretation of their functional properties.
二维¹H NMR方法已被用于确定非洲象一氧化碳肌红蛋白(MbCO)和氧合肌红蛋白(MbO₂)远侧血红素口袋中残基的侧链共振。结果表明,虽然血红素口袋中的其他残基受到的扰动最小,但与抹香鲸MbCO中的相应残基相比,非洲象MbCO和MbO₂中的苯丙氨酸CD4残基共振明显向高场移动。与缬氨酸E11的新的核Overhauser效应(NOE)连接以及血红素诱导的环流计算表明,苯丙氨酸CD4通过重新定向芳香侧链并使CD转角更靠近血红素而插入到远侧血红素口袋中。相对于抹香鲸MbCO的位置,发现苯丙氨酸CD4的CζH质子向血红素的铁移动了约4 Å,这至少需要CD螺旋主链移动3 Å。非洲象肌红蛋白中明显改变的远侧构象,而非单个远侧E7取代,为其较低的自氧化速率、较高的氧化还原电位和对CO配体增加的亲和力等改变的功能特性形成了一个合理的基础。这些结果表明,对氨基酸残基取代(E7组氨酸→谷氨酰胺)进行一对一的解释过于简单化,并且在解释取代蛋白的功能特性时必须考虑不易预测到的取代蛋白的构象变化。