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基于内坐标的简正振动频率数值计算的有效方法。

Efficient procedure for the numerical calculation of harmonic vibrational frequencies based on internal coordinates.

机构信息

Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, MS K1-83, Richland, Washington 99352, USA.

出版信息

J Phys Chem A. 2013 Aug 15;117(32):7019-29. doi: 10.1021/jp3127576. Epub 2013 Mar 5.

Abstract

We propose a general procedure for the numerical calculation of the harmonic vibrational frequencies that is based on internal coordinates and Wilson's GF methodology via double differentiation of the energy. The internal coordinates are defined as the geometrical parameters of a Z-matrix structure, thus avoiding issues related to their redundancy. Linear arrangements of atoms are described using a dummy atom of infinite mass. The procedure has been automated in FORTRAN90 and its main advantage lies in the nontrivial reduction of the number of single-point energy calculations needed for the construction of the Hessian matrix when compared to the corresponding number using double differentiation in Cartesian coordinates. For molecules of C1 symmetry the computational savings in the energy calculations amount to 36N - 30, where N is the number of atoms, with additional savings when symmetry is present. Typical applications for small and medium size molecules in their minimum and transition state geometries as well as hydrogen bonded clusters (water dimer and trimer) are presented. In all cases the frequencies based on internal coordinates differ on average by <1 cm(-1) from those obtained from Cartesian coordinates.

摘要

我们提出了一种基于内坐标和 Wilson 的 GF 方法的数值计算谐振动频率的通用程序,通过对能量进行双重微分来实现。内坐标被定义为 Z 矩阵结构的几何参数,从而避免了与它们的冗余相关的问题。原子的线性排列使用无穷大质量的虚拟原子来描述。该程序已在 FORTRAN90 中实现,其主要优点在于与在笛卡尔坐标中进行双重微分相比,构建 Hessian 矩阵所需的单点能计算次数显著减少。对于 C1 对称的分子,能量计算的计算节省量为 36N-30,其中 N 是原子的数量,并且存在对称性时会有额外的节省。我们展示了在其最小和过渡态几何形状以及氢键簇(水二聚体和三聚体)中的中小分子的典型应用。在所有情况下,基于内坐标的频率与从笛卡尔坐标获得的频率平均相差 <1cm(-1)。

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