Petruk Ariel A, Labanda María S, Alvarez Rosa M S, Marti Marcelo A
Instituto Superior de Investigaciones Biológicas, Tucumán, Argentina.
Biochim Biophys Acta. 2013 Jun;1830(6):3570-7. doi: 10.1016/j.bbagen.2013.02.023. Epub 2013 Mar 1.
Thyroxine-binding globulin (TBG) is a non-inhibitory member of the serpin family of proteins whose main structural element is the reactive center loop (RCL), that, upon cleavage by proteases, is inserted into the protein core adopting a β-strand conformation (stressed to relaxed transition, S-to-R). After S-to-R transition thyroxine (T4) affinity decreases. However, crystallographic studies in the presence or absence of the hormone in different states are unable to show significant differences in the structure and interactions of the binding site. Experimental results also suggest the existence of several S states (differing in the number of inserted RCL residues), associated with a differential affinity.
To shed light into the molecular basis that regulates T4 affinity according to the degree of RCL insertion in TBG, we performed extended molecular dynamics simulations combined with several thermodynamic analysis of the T4 binding to TBG in three different S states, and in the R state.
Our results show that, despite T4 binding in the protein by similar interactions in all states, a good correlation between the degree of RCL insertion and the binding affinity, driven by a change in TBG conformational entropy, was observed.
TBG allosteric regulation is entropy driven. The presence of multiple S states may allow more efficient T4 release due to protease activity.
The presented results are clear examples of how computer simulation methods can reveal the thermodynamic basis of allosteric effects, and provide a general framework for understanding serpin allosteric affinity regulation.
甲状腺素结合球蛋白(TBG)是丝氨酸蛋白酶抑制剂(serpin)家族的一种非抑制性蛋白质成员,其主要结构元件是反应中心环(RCL),当被蛋白酶切割后,RCL会插入蛋白质核心并采用β-链构象(从应激态到松弛态转变,S-to-R)。S-to-R转变后,甲状腺素(T4)亲和力降低。然而,在不同状态下有无激素存在时的晶体学研究无法显示结合位点的结构和相互作用有显著差异。实验结果还表明存在几种S状态(插入的RCL残基数不同),与不同的亲和力相关。
为了阐明根据TBG中RCL插入程度调节T4亲和力的分子基础,我们进行了扩展分子动力学模拟,并结合对处于三种不同S状态和R状态的TBG与T4结合的几种热力学分析。
我们的结果表明,尽管在所有状态下T4都通过相似的相互作用与蛋白质结合,但观察到RCL插入程度与结合亲和力之间存在良好的相关性,这是由TBG构象熵的变化驱动的。
TBG的变构调节是由熵驱动的。多种S状态的存在可能由于蛋白酶活性而使T4更有效地释放。
所呈现的结果是计算机模拟方法如何揭示变构效应热力学基础的清晰示例,并为理解丝氨酸蛋白酶抑制剂变构亲和力调节提供了一个通用框架。