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检测生物特征中的系统发育信号:叉积统计的普遍性。

Testing for phylogenetic signal in biological traits: the ubiquity of cross-product statistics.

机构信息

Muséum national d'Histoire naturelle, Département Ecologie et Gestion de la Biodiversité, UMR 7204 CNRS UPMC, 55-61 rue Buffon, 75005 Paris, France.

出版信息

Evolution. 2013 Mar;67(3):828-40. doi: 10.1111/j.1558-5646.2012.01823.x. Epub 2012 Nov 6.

Abstract

To evaluate rates of evolution, to establish tests of correlation between two traits, or to investigate to what degree the phylogeny of a species assemblage is predictive of a trait value so-called tests for phylogenetic signal are used. Being based on different approaches, these tests are generally thought to possess quite different statistical performances. In this article, we show that the Blomberg et al. K and K*, the Abouheif index, the Moran's I, and the Mantel correlation are all based on a cross-product statistic, and are thus all related to each other when they are associated to a permutation test of phylogenetic signal. What changes is only the way phylogenetic and trait similarities (or dissimilarities) among the tips of a phylogeny are computed. The definitions of the phylogenetic and trait-based (dis)similarities among tips thus determines the performance of the tests. We shortly discuss the biological and statistical consequences (in terms of power and type I error of the tests) of the observed relatedness among the statistics that allow tests for phylogenetic signal. Blomberg et al. K* statistic appears as one on the most efficient approaches to test for phylogenetic signal. When branch lengths are not available or not accurate, Abouheif's Cmean statistic is a powerful alternative to K*.

摘要

为了评估进化速度、检验两个特征之间的相关性,或者研究一个物种集合的系统发育与特征值之间的相关程度,人们通常会使用所谓的系统发育信号检验。这些检验基于不同的方法,一般认为具有不同的统计性能。在本文中,我们表明,Blomberg 等人的 K 和 K*、Abouheif 指数、Moran's I 和 Mantel 相关系数都基于一个交叉乘积统计量,因此当它们与系统发育信号的置换检验相关联时,它们彼此相关。变化的只是计算系统发育和特征之间(相似性或不相似性)在系统发育树的末梢之间的相似性的方式。因此,末梢之间的系统发育和基于特征的(不)相似性的定义决定了检验的性能。我们简要讨论了观察到的统计量之间的相关性对允许进行系统发育信号检验的统计量的生物学和统计学后果(检验的功效和Ⅰ型错误)。Blomberg 等人的 K统计量似乎是检验系统发育信号的最有效方法之一。当分支长度不可用或不准确时,Abouheif 的 Cmean 统计量是 K的有力替代方法。

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