Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA.
Comp Biochem Physiol Part D Genomics Proteomics. 2013 Jun;8(2):131-40. doi: 10.1016/j.cbd.2013.01.003. Epub 2013 Feb 9.
Recent advances in molecular techniques have allowed gene expression in euryhaline animals to be quantified during salinity transfers. As these investigations transition from studying single genes to utilizing genomics-based methodologies, it is an appropriate time to summarize single gene studies. Therefore, a meta-analysis was performed on 59 published studies that used quantitative polymerase chain reaction (qPCR) to examine expression of osmoregulatory genes (the Na(+)/K(+)-ATPase, NKA; the Na(+)/K(+)/2Cl(-) cotransporter, NKCC; carbonic anhydrase, CA; the cystic fibrosis transmembrane regulator, CFTR; and the H(+)-ATPase, HAT) in response to salinity transfer. Based on 887 calculated effect sizes, NKA, NKCC, CA, and HAT are up-regulated after salinity transfer, while surprisingly, CFTR is unchanged. Meta-analysis also identified influential factors contributing to these changes. For example, expression was highest: 1) during transfers from higher to lower salinities comprising a physiological transition from osmoconformity to osmoregulation, 2) 1-3 days following transfer, 3) during dissimilar transfers, and 4) in crustaceans rather than teleosts. Methodological characteristics (e.g., types of controls) were not important. Experiments lacking in the current literature were also identified. Meta-analyses are powerful tools for quantitatively synthesizing a large body of literature, and this report serves as a template for their application in other areas of comparative physiology.
近年来,分子技术的进步使得人们能够在盐度转换过程中定量研究广盐性动物的基因表达。随着这些研究从研究单个基因转变为利用基于基因组学的方法,现在是总结单个基因研究的适当时机。因此,对 59 项使用定量聚合酶链反应(qPCR)研究渗透调节基因(Na(+)/K(+)-ATPase,NKA;Na(+)/K(+)/2Cl(-)共转运蛋白,NKCC;碳酸酐酶,CA;囊性纤维化跨膜转导调节因子,CFTR;和 H(+)-ATPase,HAT)在盐度转换时的表达的已发表研究进行了荟萃分析。基于 887 个计算的效应大小,NKA、NKCC、CA 和 HAT 在盐度转换后上调,而令人惊讶的是,CFTR 没有变化。荟萃分析还确定了导致这些变化的影响因素。例如,表达最高:1)从较高盐度到较低盐度的转换期间,这涉及从渗透适应到渗透调节的生理转变,2)转移后 1-3 天,3)在不同的转换期间,4)在甲壳类动物中而不是在硬骨鱼中。方法学特征(例如,对照类型)并不重要。还确定了当前文献中缺乏的实验。荟萃分析是定量综合大量文献的有力工具,本报告为在比较生理学的其他领域应用它们提供了模板。