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(S)-N-[(4-{(S)-1-[2-(4-甲氧基苯甲酰胺基)-2-甲基丙酰基]吡咯烷-2-羧酰胺基}-3,4,5,6-四氢-2H-吡喃-4-基)羰基]脯氨酸二甲亚砜单溶剂合物(4-MeBz-Aib-Pro-Thp-Pro-OH)

(S)-N-[(4-{(S)-1-[2-(4-Meth-oxy-benz-amido)-2-methyl-propano-yl]pyrrolidine-2-carboxamido}-3,4,5,6-tetra-hydro-2H-pyran-4-yl)carbon-yl]proline dimethyl sulfoxide monosolvate (4-MeBz-Aib-Pro-Thp-Pro-OH).

作者信息

Stoykova Svetlana A, Linden Anthony, Heimgartner Heinz

机构信息

Institute of Organic Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057 Zürich, Switzerland.

出版信息

Acta Crystallogr Sect E Struct Rep Online. 2013 Mar 1;69(Pt 3):o419-20. doi: 10.1107/S1600536813004546. Epub 2013 Feb 20.

DOI:10.1107/S1600536813004546
PMID:23476594
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3588532/
Abstract

The asymmetric unit of the title compound, C28H38N4O8·C2H6OS, contains one tetra-peptide and one disordered dimethyl sulfoxide (DMSO) mol-ecule. The central five-membered ring (Pro(2)) of the peptide mol-ecule has a disordered envelope conformation [occupancy ratio 0.879 (2):0.121 (2)] with the envelope flap atom, the central C atom of the three ring methylene groups, lying on alternate sides of the mean ring plane. The terminal five-membered ring (Pro(4)) also adopts an envelope conformation with the C atom of the methylene group closest to the carboxylic acid function as the envelope flap, and the six-membered tetra-hydro-pyrane ring shows a chair conformation. The tetra-peptide exists in a helical conformation, stabilized by an intra-molecular hydrogen bond between the amide N-H group of the heterocyclic α-amino acid Thp and the amide O atom of the 4-meth-oxy-benzoyl group. This inter-action has a graph set motif of S(10) and serves to maintain a fairly rigid β-turn structure. In the crystal, the terminal hy-droxy group forms a hydrogen bond with the amide O atom of Thp of a neighbouring mol-ecule, and the amide N-H group at the opposite end of the mol-ecule forms a hydrogen bond with the amide O atom of Thp of another neighbouring mol-ecule. The combination of both inter-molecular inter-actions links the mol-ecules into an extended three-dimensional framework.

摘要

标题化合物C28H38N4O8·C2H6OS的不对称单元包含一个四肽和一个无序的二甲基亚砜(DMSO)分子。肽分子的中心五元环(Pro(2))具有无序的信封式构象[占有率为0.879 (2):0.121 (2)],信封式构象的瓣原子,即三个环亚甲基的中心C原子,位于平均环平面的交替侧。末端五元环(Pro(4))也采用信封式构象,以最靠近羧酸官能团的亚甲基的C原子作为信封式构象的瓣,六元四氢吡喃环呈椅式构象。四肽以螺旋构象存在,通过杂环α-氨基酸Thp的酰胺N-H基团与4-甲氧基苯甲酰基的酰胺O原子之间的分子内氢键得以稳定。这种相互作用具有S(10)的图形集模式,并有助于维持相当刚性的β-转角结构。在晶体中,末端羟基与相邻分子的Thp的酰胺O原子形成氢键,分子另一端的酰胺N-H基团与另一个相邻分子的Thp的酰胺O原子形成氢键。这两种分子间相互作用的组合将分子连接成一个扩展的三维框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e022/3588532/1de617991c32/e-69-0o419-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e022/3588532/2268495f69b6/e-69-0o419-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e022/3588532/1de617991c32/e-69-0o419-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e022/3588532/2268495f69b6/e-69-0o419-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e022/3588532/1de617991c32/e-69-0o419-fig2.jpg

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