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利用半合成技术构建钾离子通道。

Engineering K+ channels using semisynthesis.

作者信息

Komarov Alexander G, Costantino Corey A, Valiyaveetil Francis I

机构信息

Department of Physiology and Pharmacology, Oregon Health and Science University, Portland, OR, USA.

出版信息

Methods Mol Biol. 2013;995:3-17. doi: 10.1007/978-1-62703-345-9_1.

DOI:10.1007/978-1-62703-345-9_1
PMID:23494368
Abstract

Potassium channels conduct K(+) ions selectively and at very high rates. Central to the function of K(+) channels is a structural unit called the selectivity filter. In the selectivity filter, a row of four K(+) binding sites are created using mainly the backbone carbonyl oxygen atoms. Due to the involvement of the protein backbone, site-directed mutagenesis is of limited utility in investigating the selectivity filter. In order to overcome this limitation, we have developed a semisynthetic approach, which permits the use of chemical synthesis to manipulate the selectivity filter. In this chapter, we describe the protocols that we have developed for the semisynthesis of the K(+) channel, KcsA. We anticipate that the protocols described in this chapter will also be applicable for the semisynthesis of other integral membrane proteins of interest.

摘要

钾通道能够以非常高的速率选择性地传导钾离子。钾通道功能的核心是一个称为选择性过滤器的结构单元。在选择性过滤器中,主要利用主链羰基氧原子形成一排四个钾离子结合位点。由于蛋白质主链的参与,定点诱变在研究选择性过滤器方面的作用有限。为了克服这一限制,我们开发了一种半合成方法,该方法允许使用化学合成来操纵选择性过滤器。在本章中,我们描述了我们为钾通道KcsA的半合成所开发的方案。我们预计本章所述的方案也将适用于其他感兴趣的整合膜蛋白的半合成。

相似文献

1
Engineering K+ channels using semisynthesis.利用半合成技术构建钾离子通道。
Methods Mol Biol. 2013;995:3-17. doi: 10.1007/978-1-62703-345-9_1.
2
Semisynthesis of K+ channels.钾离子通道的半合成
Methods Enzymol. 2009;462:135-50. doi: 10.1016/S0076-6879(09)62007-3.
3
Modular strategy for the semisynthesis of a K+ channel: investigating interactions of the pore helix.用于 K+ 通道半合成的模块化策略:研究孔螺旋的相互作用。
ACS Chem Biol. 2009 Dec 18;4(12):1029-38. doi: 10.1021/cb900210r.
4
Semisynthesis and folding of the potassium channel KcsA.钾通道KcsA的半合成与折叠
J Am Chem Soc. 2002 Aug 7;124(31):9113-20. doi: 10.1021/ja0266722.
5
Instantaneous ion configurations in the K+ ion channel selectivity filter revealed by 2D IR spectroscopy.二维红外光谱揭示钾离子通道选择性过滤器中的瞬间离子构型
Science. 2016 Sep 2;353(6303):1040-1044. doi: 10.1126/science.aag1447.
6
Sodium permeability and sensitivity induced by mutations in the selectivity filter of the KcsA channel towards Kir channels.突变导致 KcsA 通道选择性过滤器对 Kir 通道的钠通透性和敏感性。
Biochimie. 2010 Mar;92(3):232-44. doi: 10.1016/j.biochi.2009.11.007. Epub 2009 Dec 3.
7
An improved method for the cost-effective expression and purification of large quantities of KcsA.一种用于经济高效地表达和纯化大量KcsA的改进方法。
Protein Expr Purif. 2016 Nov;127:53-60. doi: 10.1016/j.pep.2016.07.002. Epub 2016 Jul 5.
8
Molecular dynamics of the KcsA K(+) channel in a bilayer membrane.双层膜中KcsA钾离子通道的分子动力学
Biophys J. 2000 Jun;78(6):2900-17. doi: 10.1016/S0006-3495(00)76831-7.
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Combining in Vitro Folding with Cell Free Protein Synthesis for Membrane Protein Expression.将体外折叠与无细胞蛋白质合成相结合用于膜蛋白表达。
Biochemistry. 2016 Aug 2;55(30):4212-9. doi: 10.1021/acs.biochem.6b00488. Epub 2016 Jul 21.
10
The structure of the potassium channel: molecular basis of K+ conduction and selectivity.钾通道的结构:K⁺传导与选择性的分子基础。
Science. 1998 Apr 3;280(5360):69-77. doi: 10.1126/science.280.5360.69.

引用本文的文献

1
Probing Ion Configurations in the KcsA Selectivity Filter with Single-Isotope Labels and 2D IR Spectroscopy.用单同位素标记和二维红外光谱技术探测 KcsA 选择性过滤器中的离子构型。
J Am Chem Soc. 2023 Aug 23;145(33):18529-18537. doi: 10.1021/jacs.3c05339. Epub 2023 Aug 14.
2
Folding and misfolding of potassium channel monomers during assembly and tetramerization.钾通道单体在组装和四聚化过程中的折叠和错误折叠。
Proc Natl Acad Sci U S A. 2021 Aug 24;118(34). doi: 10.1073/pnas.2103674118.
3
Probing the Effects of Gating on the Ion Occupancy of the K Channel Selectivity Filter Using Two-Dimensional Infrared Spectroscopy.
用二维红外光谱法探测门控对 K 通道选择性过滤器离子占据的影响。
J Am Chem Soc. 2017 Jul 5;139(26):8837-8845. doi: 10.1021/jacs.7b01594. Epub 2017 May 12.
4
Semisynthetic K+ channels show that the constricted conformation of the selectivity filter is not the C-type inactivated state.半合成钾通道表明,选择性过滤器的紧缩构象不是 C 型失活状态。
Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15698-703. doi: 10.1073/pnas.1308699110. Epub 2013 Sep 9.