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药物材料的粉末结晶学:通过组合晶体结构预测和固态 1H NMR 光谱学。

Powder crystallography of pharmaceutical materials by combined crystal structure prediction and solid-state 1H NMR spectroscopy.

机构信息

Université de Lyon, (CNRS/ENS-Lyon/UCB Lyon 1), Centre de RMN à Très Hauts Champs, 5 rue de la Doua, 69100 Villeurbanne, France.

出版信息

Phys Chem Chem Phys. 2013 Jun 7;15(21):8069-80. doi: 10.1039/c3cp41095a. Epub 2013 Mar 18.

Abstract

A protocol for the ab initio crystal structure determination of powdered solids at natural isotopic abundance by combining solid-state NMR spectroscopy, crystal structure prediction, and DFT chemical shift calculations was evaluated to determine the crystal structures of four small drug molecules: cocaine, flutamide, flufenamic acid, and theophylline. For cocaine, flutamide and flufenamic acid, we find that the assigned (1)H isotropic chemical shifts provide sufficient discrimination to determine the correct structures from a set of predicted structures using the root-mean-square deviation (rmsd) between experimentally determined and calculated chemical shifts. In most cases unassigned shifts could not be used to determine the structures. This method requires no prior knowledge of the crystal structure, and was used to determine the correct crystal structure to within an atomic rmsd of less than 0.12 Å with respect to the known reference structure. For theophylline, the NMR spectra are too simple to allow for unambiguous structure selection.

摘要

我们评估了一种通过固态 NMR 光谱、晶体结构预测和 DFT 化学位移计算相结合,从天然同位素丰度的粉末固体中从头确定晶体结构的方案,以确定四种小分子药物的晶体结构:可卡因、氟他胺、氟灭酸和茶碱。对于可卡因、氟他胺和氟灭酸,我们发现分配的(1)H 各向同性化学位移足以从一组预测结构中通过实验测定和计算化学位移之间的均方根偏差(rmsd)确定正确的结构。在大多数情况下,未分配的位移不能用于确定结构。该方法不需要事先了解晶体结构,并用于在与已知参考结构相比的原子 rmsd 小于 0.12 Å 的范围内确定正确的晶体结构。对于茶碱,NMR 光谱过于简单,无法进行明确的结构选择。

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