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混合离子通道模型中反应场的镜像电荷法

Image Charge Method for Reaction Fields in a Hybrid Ion-Channel Model.

作者信息

Xu Zhenli, Cai Wei, Cheng Xiaolin

机构信息

Department of Mathematics and Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China.

出版信息

Commun Comput Phys. 2011;9(4):1056-1070. doi: 10.4208/cicp.160410.200910a. Epub 2010 Nov 10.

Abstract

A multiple-image method is proposed to approximate the reaction-field potential of a source charge inside a finite length cylinder due to the electric polarization of the surrounding membrane and bulk water. When applied to a hybrid ion-channel model, this method allows a fast and accurate treatment of the electrostatic interactions of protein with membrane and solvent. To treat the channel/membrane interface boundary conditions of the electric potential, an optimization approach is used to derive image charges by fitting the reaction-field potential expressed in terms of cylindric harmonics. Meanwhile, additional image charges are introduced to satisfy the boundary conditions at the planar membrane interfaces. In the end, we convert the electrostatic interaction problem in a complex inhomogeneous system of ion channel/membrane/water into one in a homogeneous free space embedded with discrete charges (the source charge and image charges). The accuracy of this method is then validated numerically in calculating the solvation self-energy of a point charge.

摘要

提出了一种多图像方法来近似有限长度圆柱体内源电荷由于周围膜和本体水的电极化而产生的反应场电势。当应用于混合离子通道模型时,该方法能够快速准确地处理蛋白质与膜和溶剂之间的静电相互作用。为了处理电势的通道/膜界面边界条件,采用一种优化方法,通过拟合用圆柱谐波表示的反应场电势来推导镜像电荷。同时,引入额外的镜像电荷以满足平面膜界面处的边界条件。最后,我们将离子通道/膜/水的复杂非均匀系统中的静电相互作用问题转化为嵌入离散电荷(源电荷和镜像电荷)的均匀自由空间中的问题。然后通过数值验证了该方法在计算点电荷溶剂化自能方面的准确性。

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Fast Analytical Methods for Macroscopic Electrostatic Models in Biomolecular Simulations.
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