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基于设计的生物合成基因簇重新工程:实践中的即插即用。

Design-based re-engineering of biosynthetic gene clusters: plug-and-play in practice.

机构信息

Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Groningen, The Netherlands.

出版信息

Curr Opin Biotechnol. 2013 Dec;24(6):1144-50. doi: 10.1016/j.copbio.2013.03.006. Epub 2013 Mar 27.

Abstract

Synthetic biology is revolutionizing the way in which the biosphere is explored for natural products. Through computational genome mining, thousands of biosynthetic gene clusters are being identified in microbial genomes, which constitute a rich source of potential novel pharmaceuticals. New methods are currently being devised to prioritize these gene clusters in terms of their potential for yielding biochemical novelty. High-potential gene clusters from any biological source can then be activated by 'refactoring' their native regulatory machinery, replacing it by synthetic, orthogonal regulation and optimizing enzyme expression to function effectively in an industry-compatible target host. Various part libraries and assembly technologies have recently been developed which facilitate this process.

摘要

合成生物学正在彻底改变人们探索生物圈中天然产物的方式。通过计算基因组挖掘,在微生物基因组中发现了成千上万的生物合成基因簇,这些基因簇构成了潜在新型药物的丰富来源。目前正在设计新的方法,根据产生生化新颖性的潜力对这些基因簇进行优先级排序。然后,可以通过“重构”其天然调控机制来激活任何生物来源的高潜力基因簇,用合成的、正交的调控机制替代它,并优化酶表达,使其在与工业兼容的目标宿主中有效地发挥作用。最近开发了各种部件库和组装技术来促进这一过程。

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