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体外RNA的合成与标记

Synthesis and labeling of RNA in vitro.

作者信息

Huang Chao, Yu Yi-Tao

机构信息

Process Science Downstream, Bristol-Myers Squibb Company, East Syracuse, New York, USA.

出版信息

Curr Protoc Mol Biol. 2013 Apr;Chapter 4:Unit4.15. doi: 10.1002/0471142727.mb0415s102.

DOI:10.1002/0471142727.mb0415s102
PMID:23547015
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3736555/
Abstract

This unit discusses several methods for generating large amounts of uniformly labeled, end-labeled, and site-specifically labeled RNAs in vitro. The methods involve a number of experimental procedures, including RNA transcription, 5' dephosphorylation and rephosphorylation, 3' terminal nucleotide addition (via ligation), site-specific RNase H cleavage directed by 2'-O-methyl RNA-DNA chimeras, and 2-piece splint ligation. The applications of these RNA radiolabeling approaches are also discussed.

摘要

本单元讨论了几种在体外生成大量均匀标记、末端标记和位点特异性标记RNA的方法。这些方法涉及许多实验步骤,包括RNA转录、5'去磷酸化和再磷酸化、3'末端核苷酸添加(通过连接)、由2'-O-甲基RNA-DNA嵌合体指导的位点特异性RNase H切割以及两段式夹板连接。还讨论了这些RNA放射性标记方法的应用。

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本文引用的文献

1
Nucleotide analog interference mapping.核苷酸类似物干扰图谱分析
Methods Enzymol. 2009;468:3-30. doi: 10.1016/S0076-6879(09)68001-0.
2
Synthesis of peptide-oligonucleotide conjugates using a heterobifunctional crosslinker.使用异双功能交联剂合成肽-寡核苷酸缀合物。
Curr Protoc Nucleic Acid Chem. 2010 Sep;Chapter 4:Unit4.41. doi: 10.1002/0471142700.nc0441s42.
3
Targeted 2'-O methylation at a nucleotide within the pseudoknot of telomerase RNA reduces telomerase activity in vivo.靶向端粒酶 RNA 假结中核苷酸的 2'-O 甲基化降低了体内端粒酶活性。
Mol Pharm. 2019 Feb 4;16(2):914-920. doi: 10.1021/acs.molpharmaceut.8b01247. Epub 2019 Jan 15.
4
Distributive enzyme binding controlled by local RNA context results in 3' to 5' directional processing of dicistronic tRNA precursors by Escherichia coli ribonuclease P.由局部 RNA 环境控制的分布酶结合导致大肠杆菌核糖核酸酶 P 对双顺反子 tRNA 前体进行 3' 到 5' 的定向加工。
Nucleic Acids Res. 2019 Feb 20;47(3):1451-1467. doi: 10.1093/nar/gky1162.
5
Human ribosomal protein eS1 is engaged in cellular events related to processing and functioning of U11 snRNA.人类核糖体蛋白eS1参与了与U11小核RNA加工和功能相关的细胞活动。
Nucleic Acids Res. 2017 Sep 6;45(15):9121-9137. doi: 10.1093/nar/gkx559.
6
Analysis of mRNA deadenylation by multi-protein complexes.多蛋白复合物的 mRNA 去腺苷酸化分析。
Methods. 2017 Aug 15;126:95-104. doi: 10.1016/j.ymeth.2017.06.009. Epub 2017 Jun 13.
7
In Vitro Enzymatic and Cell Culture-Based Assays for Measuring Activity of HBV RNaseH Inhibitors.用于测量乙肝病毒核糖核酸酶H抑制剂活性的体外酶法和基于细胞培养的分析方法
Methods Mol Biol. 2017;1540:179-192. doi: 10.1007/978-1-4939-6700-1_14.
8
Evolution of Arabidopsis protection of telomeres 1 alters nucleic acid recognition and telomerase regulation.拟南芥端粒保护蛋白1的进化改变了核酸识别和端粒酶调控。
Nucleic Acids Res. 2016 Nov 16;44(20):9821-9830. doi: 10.1093/nar/gkw807. Epub 2016 Sep 19.
9
Purification and Functional Reconstitution of Box H/ACA Ribonucleoprotein Particles.盒式H/ACA核糖核蛋白颗粒的纯化与功能重组
Methods Mol Biol. 2016;1421:97-109. doi: 10.1007/978-1-4939-3591-8_9.
10
Pseudouridine in mRNA: Incorporation, Detection, and Recoding.信使核糖核酸中的假尿苷:掺入、检测与重新编码
Methods Enzymol. 2015;560:187-217. doi: 10.1016/bs.mie.2015.03.009. Epub 2015 Apr 27.
Mol Cell Biol. 2010 Sep;30(18):4368-78. doi: 10.1128/MCB.00384-10. Epub 2010 Jul 20.
4
Pre-mRNA splicing in the nuclei of Xenopus oocytes.非洲爪蟾卵母细胞核中的前体mRNA剪接
Methods Mol Biol. 2006;322:149-63. doi: 10.1007/978-1-59745-000-3_11.
5
Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism.酵母U2小核仁RNA的假尿苷酸化由RNA引导机制或RNA非依赖机制催化。
EMBO J. 2005 Jul 6;24(13):2403-13. doi: 10.1038/sj.emboj.7600718. Epub 2005 Jun 16.
6
Detection and quantitation of RNA base modifications.RNA碱基修饰的检测与定量分析。
RNA. 2004 Jun;10(6):996-1002. doi: 10.1261/rna.7110804.
7
Pseudouridylation (Psi) of U2 snRNA in S. cerevisiae is catalyzed by an RNA-independent mechanism.酿酒酵母中U2 snRNA的假尿苷化(Ψ)由一种不依赖RNA的机制催化。
EMBO J. 2003 Apr 15;22(8):1889-97. doi: 10.1093/emboj/cdg191.
8
An H/ACA guide RNA directs U2 pseudouridylation at two different sites in the branchpoint recognition region in Xenopus oocytes.一个H/ACA引导RNA在非洲爪蟾卵母细胞的分支点识别区域的两个不同位点指导U2假尿苷化。
RNA. 2002 Dec;8(12):1515-25.
9
3' splice site recognition in nematode trans-splicing involves enhancer-dependent recruitment of U2 snRNP.线虫反式剪接中3'剪接位点的识别涉及U2 snRNP的增强子依赖性募集。
RNA. 2001 Jun;7(6):785-92. doi: 10.1017/s1355838201010263.
10
Functional recognition of the 3' splice site AG by the splicing factor U2AF35.剪接因子U2AF35对3'剪接位点AG的功能识别。
Nature. 1999 Dec 16;402(6763):832-5. doi: 10.1038/45590.